Integrating Transcriptomics and Metabolomics to Characterize Metabolic Regulation to Elevated CO2 in Chlamydomonas Reinhardtii

The effects of elevated CO2 concentrations on changes in fatty acids and amino acids of three species of microalgae

(2020) Chengwei Liang et al.   PHYCOLOGIA

Elevated carbon dioxide levels lead to proteome-wide alterations for optimal growth of a fast-growing cyanobacterium, Synechococcus elongatus PCC 11801

(2019) Kanika Mehta et al.   Scientific Reports

Metabolic, Physiological, and Transcriptomics Analysis of Batch Cultures of the Green Microalga Chlamydomonas Grown on Different Acetate Concentrations

(2019) Bogaert et al.   Cells

Anthocyanins Accumulation and Molecular Analysis of Correlated Genes by Metabolome and Transcriptome in Green and Purple Asparaguses ( Asparagus Officinalis , L.)

(2018) Tingting Dong et al.   FOOD CHEMISTRY

Transcriptome and Metabolic Profiling Provides Insights into Betalain Biosynthesis and Evolution in Mirabilis jalapa

(2018) Guy Polturak et al.   Molecular Plant

Identification of Salt Stress Responding Genes Using Transcriptome Analysis in Green Alga Chlamydomonas reinhardtii

(2018) Ning Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Carbonate buffering and metabolic controls on carbon dioxide in rivers

(2017) Edward G. Stets et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Biological consequences of weak acidification caused by elevated carbon dioxide in freshwater ecosystems

(2017) Caleb T. Hasler et al.   HYDROBIOLOGIA

Genomewide transcriptional reprogramming in the seagrass Cymodocea nodosa under experimental ocean acidification

(2017) Miriam Ruocco et al.   MOLECULAR ECOLOGY

Two Glycerol-3-Phosphate Dehydrogenases fromChlamydomonasHave Distinct Roles in Lipid Metabolism

(2017) Thomas Driver et al.   PLANT PHYSIOLOGY

Regulation and structure of the heteromeric acetyl-CoA carboxylase

(2016) Matthew J. Salie et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

Transcriptome analysis reveals global regulation in response to CO2 supplementation in oleaginous microalga Coccomyxa subellipsoidea C-169

(2016) Huifeng Peng et al.   Biotechnology for Biofuels

Decreased photosynthesis and growth with reduced respiration in the model diatom Phaeodactylum tricornutum grown under elevated CO2 over 1800 generations

(2016) Futian Li et al.   GLOBAL CHANGE BIOLOGY

Transcriptome-based global analysis of gene expression in response to carbon dioxide deprivation in the green algae Chlorella pyrenoidosa

(2016) Jianhua Fan et al.   Algal Research-Biomass Biofuels and Bioproducts

High carbon (CO 2 ) supply leads to elevated intracellular acetyl CoA levels and increased lipid accumulation in Chlorella vulgaris

(2016) Steffi Jose et al.   Algal Research-Biomass Biofuels and Bioproducts

Impacts of CO2 concentration on growth, lipid accumulation, and carbon-concentrating-mechanism-related gene expression in oleaginous Chlorella

(2015) Jianhua Fan et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Elevated CO2improves lipid accumulation by increasing carbon metabolism inChlorella sorokiniana

(2015) Zhilan Sun et al.   PLANT BIOTECHNOLOGY JOURNAL

Growth responses of a green alga to multiple environmental drivers

(2015) Georgina Brennan et al.   Nature Climate Change

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Choreography of Transcriptomes and Lipidomes of Nannochloropsis Reveals the Mechanisms of Oil Synthesis in Microalgae

(2014) J. Li et al.   PLANT CELL

Engineering fatty acid biosynthesis in microalgae for sustainable biodiesel

(2013) Jillian L. Blatti et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Metabolic acclimation to excess light intensity inChlamydomonas reinhardtii

(2013) MARIA C. DAVIS et al.   PLANT CELL AND ENVIRONMENT

Transcriptome and metabolome analysis of Citrus fruit to elucidate puffing disorder

(2013) Ana M. Ibáñez et al.   PLANT SCIENCE

CO2 supplementation to domestic wastewater enhances microalgae lipid accumulation under mixotrophic microenvironment: Effect of sparging period and interval

(2012) M. Prathima Devi et al.   BIORESOURCE TECHNOLOGY

Transcriptomic analysis of the oleaginous microalga Neochloris oleoabundans reveals metabolic insights into triacylglyceride accumulation

(2012) Hamid Rismani-Yazdi et al.   Biotechnology for Biofuels

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

The Response of Diatom Central Carbon Metabolism to Nitrogen Starvation Is Different from That of Green Algae and Higher Plants

(2011) N. L. Hockin et al.   PLANT PHYSIOLOGY

Transcriptomic Analyses during the Transition from Biomass Production to Lipid Accumulation in the Oleaginous Yeast Yarrowia lipolytica

(2011) Nicolas Morin et al.   PLoS One

Enzymatic pretreatment of Chlamydomonas reinhardtii biomass for ethanol production

(2010) Seung Phill Choi et al.   BIORESOURCE TECHNOLOGY

Not just a circle: flux modes in the plant TCA cycle

(2010) Lee J. Sweetlove et al.   TRENDS IN PLANT SCIENCE

Oceanographic and Biogeochemical Insights from Diatom Genomes

(2009) Chris Bowler et al.   Annual Review of Marine Science

Culture of Microalgae Chlamydomonas reinhardtii in Wastewater for Biomass Feedstock Production

(2009) Qing-xue Kong et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Selection of microalgae for lipid production under high levels carbon dioxide

(2009) Chan Yoo et al.   BIORESOURCE TECHNOLOGY

Lipid accumulation and CO2 utilization of Nannochloropsis oculata in response to CO2 aeration

(2008) Sheng-Yi Chiu et al.   BIORESOURCE TECHNOLOGY