Metabolic, Physiological, and Transcriptomics Analysis of Batch Cultures of the Green Microalga Chlamydomonas Grown on Different Acetate Concentrations

Regulation of photoprotection gene expression in Chlamydomonas by a putative E3 ubiquitin ligase complex and a homolog of CONSTANS

(2019) Stéphane T. Gabilly et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Acetic acid is key for synergetic hydrogen production in Chlamydomonas-bacteria co-cultures

(2019) Neda Fakhimi et al.   BIORESOURCE TECHNOLOGY

The CONSTANS flowering complex controls the protective response of photosynthesis in the green alga Chlamydomonas

(2019) Ryutaro Tokutsu et al.   Nature Communications

Surprisal analysis of the transcriptomic response of the green microalga Chlamydomonas to the addition of acetate during day/night cycles

(2018) R. Willamme et al.   CHEMICAL PHYSICS

Surprisal analysis of genome-wide transcript profiling identifies differentially expressed genes and pathways associated with four growth conditions in the microalga Chlamydomonas

(2018) Kenny A. Bogaert et al.   PLoS One

A light switch based on protein S-nitrosylation fine-tunes photosynthetic light-harvesting in the microalga Chlamydomonas reinhardtii

(2016) Hanna Berger et al.   PLANT PHYSIOLOGY

Statistical thermodynamics of transcription profiles in normal development and tumorigeneses in cohorts of patients

(2015) F. Remacle et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

The reduction of gene expression variability from single cells to populations follows simple statistical laws

(2015) Vincent Piras et al.   GENOMICS

Metabolomic analysis of the green microalga Chlamydomonas reinhardtii cultivated under day/night conditions

(2015) Rémi Willamme et al.   JOURNAL OF BIOTECHNOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Changes in Transcription and Metabolism During the Early Stage of Replicative Cellular Senescence in Budding Yeast

(2014) Yuka Kamei et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Integration of Carbon Assimilation Modes with Photosynthetic Light Capture in the Green Alga Chlamydomonas reinhardtii

(2014) Hanna Berger et al.   Molecular Plant

Respiratory-deficient mutants of the unicellular green alga Chlamydomonas: A review

(2013) Thalia Salinas et al.   BIOCHIMIE

Conditional senescence inChlamydomonas reinhardtii(Chlorophyceae)

(2013) Penny L. Humby et al.   JOURNAL OF PHYCOLOGY

Lack of isocitrate lyase inChlamydomonasleads to changes in carbon metabolism and in the response to oxidative stress under mixotrophic growth

(2013) Charlotte Plancke et al.   PLANT JOURNAL

Surprisal Analysis of Transcripts Expression Levels in the Presence of Noise: A Reliable Determination of the Onset of a Tumor Phenotype

(2013) Ayelet Gross et al.   PLoS One

miRNA and mRNA cancer signatures determined by analysis of expression levels in large cohorts of patients

(2013) S. Zadran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Oil accumulation is controlled by carbon precursor supply for fatty acid synthesis in Chlamydomonas reinhardtii

(2012) Jilian Fan et al.   PLANT AND CELL PHYSIOLOGY

Transcriptome-Wide Changes in Chlamydomonas reinhardtii Gene Expression Regulated by Carbon Dioxide and the CO2-Concentrating Mechanism Regulator CIA5/CCM1

(2012) W. Fang et al.   PLANT CELL

On a fundamental structure of gene networks in living cells

(2012) N. Kravchenko-Balasha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Convergence of Logic of Cellular Regulation in Different Premalignant Cells by an Information Theoretic Approach

(2011) Nataly Kravchenko-Balasha et al.   BMC Systems Biology

Autophagy in the model algaChlamydomonas reinhardtii

(2010) María Esther Pérez-Pérez et al.   Autophagy

YPEL3, a p53-Regulated Gene that Induces Cellular Senescence

(2010) Kevin D. Kelley et al.   CANCER RESEARCH

Trophic status of Chlamydomonas reinhardtii influences the impact of iron deficiency on photosynthesis

(2010) Aimee M. Terauchi et al.   PHOTOSYNTHESIS RESEARCH

Information-theoretic analysis of phenotype changes in early stages of carcinogenesis

(2010) F. Remacle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA