Metagenomic Analyses of Microbial and Carbohydrate-Active Enzymes in the Rumen of Holstein Cows Fed Different Forage-to-Concentrate Ratios

Fusion of Carbohydrate Binding Modules to Bifunctional Cellulase to Enhance Binding Affinity and Cellulolytic Activity

(2018) Anoth Maharjan et al.   BIOTECHNOLOGY AND BIOPROCESS ENGINEERING

SACCHARIS: an automated pipeline to streamline discovery of carbohydrate active enzyme activities within polyspecific families and de novo sequence datasets

(2018) Darryl R. Jones et al.   Biotechnology for Biofuels

Symposium review: Host–rumen microbe interactions may be leveraged to improve the productivity of dairy cows

(2018) D.M. Bickhart et al.   JOURNAL OF DAIRY SCIENCE

Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen

(2018) Robert D. Stewart et al.   Nature Communications

Persistence of Cellulolytic Bacteria Fibrobacter and Treponema After Short-Term Corn Stover-Based Dietary Intervention Reveals the Potential to Improve Rumen Fibrolytic Function

(2018) Xiao Xie et al.   Frontiers in Microbiology

Interspecies cross-feeding orchestrates carbon degradation in the rumen ecosystem

(2018) Lindsey M. Solden et al.   Nature Microbiology

In depth analysis of rumen microbial and carbohydrate-active enzymes profile in Indian crossbred cattle

(2017) V. Lyju Jose et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Effects of different oligosaccharides at various dosages on the composition of gut microbiota and short-chain fatty acids in mice with constipation

(2017) Linlin Wang et al.   Food & Function

The First Cry2Ac-Type Protein Toxic to Helicoverpa armigera: Cloning and Overexpression of Cry2ac7 Gene from SBS-BT1 Strain of Bacillus thuringiensis

(2017) Faiza Saleem et al.   Toxins

Impact of Chestnut and Quebracho Tannins on Rumen Microbiota of Bovines

(2017) Juan María Díaz Carrasco et al.   Biomed Research International

Metatranscriptomics Reveals the Active Bacterial and Eukaryotic Fibrolytic Communities in the Rumen of Dairy Cow Fed a Mixed Diet

(2017) Sophie Comtet-Marre et al.   Frontiers in Microbiology

A Metagenomics Investigation of Carbohydrate-Active Enzymes along the Gastrointestinal Tract of Saudi Sheep

(2017) Saad Al-Masaudi et al.   Frontiers in Microbiology

Effect of Dietary Forage to Concentrate Ratios on Dynamic Profile Changes and Interactions of Ruminal Microbiota and Metabolites in Holstein Heifers

(2017) Jun Zhang et al.   Frontiers in Microbiology

Microbial xylanases and their industrial application in pulp and paper biobleaching: a review

(2017) Abhishek Walia et al.   3 Biotech

Metagenomic insights into the rumen microbial fibrolytic enzymes in Indian crossbred cattle fed finger millet straw

(2017) V. Lyju Jose et al.   AMB Express

Microbial xylanases and their industrial application in pulp and paper biobleaching: a review

(2017) Abhishek Walia et al.   3 Biotech

Impact of levels of total digestible nutrients on microbiome, enzyme profile and degradation of feeds in buffalo rumen

(2017) Anju Kala et al.   PLoS One

Complete genome sequence of a deeply branched marine Bacteroidia bacterium Draconibacterium orientale type strain FH5T

(2016) Xiaoli Li et al.   Marine Genomics

A first insight into the intestinal microbiota of snow trout (Schizothorax zarudnyi)

(2016) Mahdi Ghanbari et al.   SYMBIOSIS

Three-dimensional structures of two heavily N-glycosylatedAspergillussp. family GH3 β-D-glucosidases

(2016) Jon Agirre et al.   Acta Crystallographica Section D-Structural Biology

Transmissible microbial and metabolomic remodeling by soluble dietary fiber improves metabolic homeostasis

(2015) Baokun He et al.   Scientific Reports

Longitudinal shifts in bacterial diversity and fermentation pattern in the rumen of steers grazing wheat pasture

(2014) D.W. Pitta et al.   ANAEROBE

Metatranscriptomic Analyses of Plant Cell Wall Polysaccharide Degradation by Microorganisms in the Cow Rumen

(2014) Xin Dai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic Potential for Polysaccharide Deconstruction in Bacteria

(2014) Renaud Berlemont et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Correction: Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

(2014) Zhongtao Zhao et al.   BMC GENOMICS

Microbial and Carbohydrate Active Enzyme profile of buffalo rumen metagenome and their alteration in response to variation in the diet

(2014) Dishita D. Patel et al.   GENE

Do Rumen Bacteroidetes Utilize an Alternative Mechanism for Cellulose Degradation?

(2014) A. E. Naas et al.   mBio

Metagenome Analysis of Protein Domain Collocation within Cellulase Genes of Goat Rumen Microbes

(2013) SooYeon Lim et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

A heterozygous moth genome provides insights into herbivory and detoxification

(2013) Minsheng You et al.   NATURE GENETICS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Metagenomic Insights into the Carbohydrate-Active Enzymes Carried by the Microorganisms Adhering to Solid Digesta in the Rumen of Cows

(2013) Lingling Wang et al.   PLoS One

Microbial carbohydrate esterases deacetylating plant polysaccharides

(2012) Peter Biely   BIOTECHNOLOGY ADVANCES

Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets

(2012) Asma Zened et al.   FEMS MICROBIOLOGY ECOLOGY

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Metagenomics of the Svalbard Reindeer Rumen Microbiome Reveals Abundance of Polysaccharide Utilization Loci

(2012) Phillip B. Pope et al.   PLoS One

Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia

(2012) Manuel Martinez-Garcia et al.   PLoS One

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools

(2011) Robert W. Li et al.   ENVIRONMENTAL MICROBIOLOGY

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Assessment of fibrolytic activities of 18 commercial enzyme products and their abilities to degrade the cell wall fraction of corn stalks in in vitro enzymatic and ruminal batch cultures

(2010) H.J. Yang et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Rumen physiology constrains diet niche: linking digestive physiology and food selection across wild ruminant species

(2010) Daryl Codron et al.   CANADIAN JOURNAL OF ZOOLOGY

Diversity, abundance and characterization of ruminal cysteine phytases suggest their important role in phytate degradation

(2010) Huoqing Huang et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of rumen ciliate community composition in domestic sheep, deer, and cattle, feeding on varying diets, by means of PCR-DGGE and clone libraries

(2010) Sandra Kittelmann et al.   FEMS MICROBIOLOGY ECOLOGY

Genetic diversity and diet specificity of ruminal Prevotella revealed by 16S rRNA gene-based analysis

(2010) Aschalew Z. Bekele et al.   FEMS MICROBIOLOGY LETTERS

CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database

(2010) Byung H Park et al.   GLYCOBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

Rumen Microbiome Composition Determined Using Two Nutritional Models of Subacute Ruminal Acidosis

(2009) E. Khafipour et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Isolation of a novel gene encoding a 3,5,6-trichloro-2-pyridinol degrading enzyme from a cow rumen metagenomic library

(2009) Renukaradhya K. Math et al.   BIODEGRADATION

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

An Efficient RNA Extraction Method for Estimating Gut Microbial Diversity by Polymerase Chain Reaction

(2009) Seungha Kang et al.   CURRENT MICROBIOLOGY

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

(2009) Jennifer M. Brulc et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamics of initial colonization of nonconserved perennial ryegrass by anaerobic fungi in the bovine rumen

(2008) Joan E. Edwards et al.   FEMS MICROBIOLOGY ECOLOGY

Effect of tea saponin on methanogenesis, microbial community structure and expression ofmcrAgene, in cultures of rumen micro-organisms

(2008) Y.Q. Guo et al.   LETTERS IN APPLIED MICROBIOLOGY

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Glycosyltransferases: Structures, Functions, and Mechanisms

(2007) L.L. Lairson et al.   Annual Review of Biochemistry