Automated segmentation and analysis of retinal microglia within ImageJ
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Automated segmentation and analysis of retinal microglia within ImageJ
Authors
Keywords
Retinal microglia, Automated analysis, Kernel principal component analysis, ImageJ, Retinal degeneration, Light damage, Cell counting
Journal
EXPERIMENTAL EYE RESEARCH
Volume 203, Issue -, Pages 108416
Publisher
Elsevier BV
Online
2020-12-24
DOI
10.1016/j.exer.2020.108416
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- SciPy 1.0: fundamental algorithms for scientific computing in Python
- (2020) Pauli Virtanen et al. NATURE METHODS
- Sectoral activation of glia in an inducible mouse model of autosomal dominant retinitis pigmentosa
- (2020) Michael T. Massengill et al. Scientific Reports
- Pinpointing Cell Identity in Time and Space
- (2020) Anca F. Savulescu et al. Frontiers in Molecular Biosciences
- Microglial Function Is Distinct in Different Anatomical Locations during Retinal Homeostasis and Degeneration
- (2019) Emily G. O’Koren et al. IMMUNITY
- Neuroinflammation: friend and foe for ischemic stroke
- (2019) Richard L. Jayaraj et al. Journal of Neuroinflammation
- Microglial Morphometric Parameters Correlate With the Expression Level of IL-1β, and Allow Identifying Different Activated Morphotypes
- (2019) María del Mar Fernández-Arjona et al. Frontiers in Cellular Neuroscience
- New concepts in macrophage ontogeny in the adult neural retina
- (2018) Daniel R. Saban CELLULAR IMMUNOLOGY
- Three-dimensional intact-tissue sequencing of single-cell transcriptional states
- (2018) Xiao Wang et al. SCIENCE
- Microglial Activation After Systemic Stimulation With Lipopolysaccharide and Escherichia coli
- (2018) Inge C. M. Hoogland et al. Frontiers in Cellular Neuroscience
- Automated Morphological Analysis of Microglia After Stroke
- (2018) Steffanie Heindl et al. Frontiers in Cellular Neuroscience
- Damage-associated molecular pattern recognition is required for induction of retinal neuroprotective pathways in a sex-dependent manner
- (2018) Marcus J. Hooper et al. Scientific Reports
- A Brief History of Microglial Ultrastructure: Distinctive Features, Phenotypes, and Functions Discovered Over the Past 60 Years by Electron Microscopy
- (2018) Julie C. Savage et al. Frontiers in Immunology
- Microglia in the Retina: Roles in Development, Maturity, and Disease
- (2018) Sean M. Silverman et al. Annual Review of Vision Science
- The effects of haloperidol on microglial morphology and translocator protein levels: An in vivo study in rats using an automated cell evaluation pipeline
- (2018) Peter S Bloomfield et al. JOURNAL OF PSYCHOPHARMACOLOGY
- PU.1 regulates Alzheimer’s disease-associated genes in primary human microglia
- (2018) Justin Rustenhoven et al. Molecular Neurodegeneration
- An End-to-end System for Automatic Characterization of Iba1 Immunopositive Microglia in Whole Slide Imaging
- (2018) Alexander D. Kyriazis et al. NEUROINFORMATICS
- Novel Methods for Microglia Segmentation, Feature Extraction, and Classification
- (2017) Yuchun Ding et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Characterizing microglia activation: a spatial statistics approach to maximize information extraction
- (2017) Benjamin M. Davis et al. Scientific Reports
- Pattern of retinal morphological and functional decay in a light-inducible, rhodopsin mutant mouse
- (2017) Claudia Gargini et al. Scientific Reports
- Monocyte infiltration and proliferation reestablish myeloid cell homeostasis in the mouse retina following retinal pigment epithelial cell injury
- (2017) Wenxin Ma et al. Scientific Reports
- Requirement for Microglia for the Maintenance of Synaptic Function and Integrity in the Mature Retina
- (2016) Xu Wang et al. JOURNAL OF NEUROSCIENCE
- Retinal Macroglial Responses in Health and Disease
- (2016) Rosa de Hoz et al. Biomed Research International
- Fate mapping reveals that microglia and recruited monocyte-derived macrophages are definitively distinguishable by phenotype in the retina
- (2016) E. G. O’Koren et al. Scientific Reports
- Experimental autoimmune uveitis and other animal models of uveitis: An update
- (2015) Rupesh Agrawal et al. INDIAN JOURNAL OF OPHTHALMOLOGY
- Quantitating the subtleties of microglial morphology with fractal analysis
- (2013) Audrey Karperien et al. Frontiers in Cellular Neuroscience
- Fate Mapping Reveals Origins and Dynamics of Monocytes and Tissue Macrophages under Homeostasis
- (2012) Simon Yona et al. IMMUNITY
- Fiji: an open-source platform for biological-image analysis
- (2012) Johannes Schindelin et al. NATURE METHODS
- An Automated Method to Quantify Microglia Morphology and Application to Monitor Activation State Longitudinally In Vivo
- (2012) Cleopatra Kozlowski et al. PLoS One
- Synaptic Pruning by Microglia Is Necessary for Normal Brain Development
- (2011) R. C. Paolicelli et al. SCIENCE
- Mutations of the Opsin Gene (Y102H and I307N) Lead to Light-induced Degeneration of Photoreceptors and Constitutive Activation of Phototransduction in Mice
- (2010) Ewa Budzynski et al. JOURNAL OF BIOLOGICAL CHEMISTRY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started