Dysbiosis of the shrimp ( Penaeus monodon ) gut microbiome with AHPND outbreaks revealed by 16S rRNA metagenomics analysis

Hypoimmunity and intestinal bacterial imbalance are closely associated with blue body syndrome in cultured Penaeus vannamei

(2020) QingJian Liang et al.   AQUACULTURE

Understanding the role of the shrimp gut microbiome in health and disease

(2020) Corey C. Holt et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Microecological Koch’s postulates reveal that intestinal microbiota dysbiosis contributes to shrimp white feces syndrome

(2020) Zhijian Huang et al.   Microbiome

White spot syndrome virus (WSSV) disturbs the intestinal microbiota of shrimp (Penaeus vannamei) reared in biofloc and clear seawater

(2020) Cecília de Souza Valente et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The bacteria from large-sized bioflocs are more associated with the shrimp gut microbiota in culture system

(2020) Lei Huang et al.   AQUACULTURE

Bacterial population in intestines of white shrimp, Litopenaeus vannamei fed a synbiotic containing Lactobacillus plantarum and galactooligosaccharide

(2019) Truong-Giang Huynh et al.   AQUACULTURE RESEARCH

Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases

(2019) Serena Sanna et al.   NATURE GENETICS

Characteristics of intestinal microbiota in the Pacific white shrimp Litopenaeus vannamei differing growth performances in the marine cultured environment

(2019) Lanfen Fan et al.   AQUACULTURE

Variations of the intestinal gut microbiota of farmed rainbow trout, Oncorhynchus mykiss (Walbaum), depending on the infection status of the fish

(2019) A.N. Parshukov et al.   JOURNAL OF APPLIED MICROBIOLOGY

Propionate-Producing Consortium Restores Antibiotic-Induced Dysbiosis in a Dynamic in vitro Model of the Human Intestinal Microbial Ecosystem

(2019) Racha El Hage et al.   Frontiers in Microbiology

Intestinal bacterial signatures of the “cotton shrimp-like” disease explain the change of growth performance and immune responses in Pacific white shrimp (Litopenaeus vannamei)

(2019) Li Zhou et al.   FISH & SHELLFISH IMMUNOLOGY

Comparison of the intestinal microbiota composition and function in healthy and diseased Yunlong Grouper

(2019) Chao Ma et al.   AMB Express

Intestinal bacterial signatures of white feces syndrome in shrimp

(2018) Dongwei Hou et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Starvation influences the microbiota assembly and expression of immunity-related genes in the intestine of grass carp ( Ctenopharyngodon idellus )

(2018) Ngoc Tuan Tran et al.   AQUACULTURE

Starvation stress affects the interplay among shrimp gut microbiota, digestion and immune activities

(2018) Wen-Fang Dai et al.   FISH & SHELLFISH IMMUNOLOGY

Comparative analysis of the bacterial community compositions of the shrimp intestine, surrounding water and sediment

(2018) D. Hou et al.   JOURNAL OF APPLIED MICROBIOLOGY

White spot syndrome virus (WSSV) infection impacts intestinal microbiota composition and function in Litopenaeus vannamei

(2018) Jun Wang et al.   FISH & SHELLFISH IMMUNOLOGY

A meta-analysis reveals the environmental and host factors shaping the structure and function of the shrimp microbiota

(2018) Fernanda Cornejo-Granados et al.   PeerJ

Intestinal Microbiota of White Shrimp Penaeus vannamei Under Intensive Cultivation Conditions in Ecuador

(2017) Oreste Gainza et al.   MICROBIAL ECOLOGY

Composition, diversity and function of intestinal microbiota in pacific white shrimp (Litopenaeus vannamei) at different culture stages

(2017) Shenzheng Zeng et al.   PeerJ

Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease

(2017) Veronika B. Dubinkina et al.   Microbiome

Habitat and indigenous gut microbes contribute to the plasticity of gut microbiome in oriental river prawn during rapid environmental change

(2017) Cheng-Yu Chen et al.   PLoS One

Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions

(2017) Fernanda Cornejo-Granados et al.   Scientific Reports

Influence of different dietary carbohydrate sources on the growth and intestinal microbiota of Litopenaeus vannamei at low salinity

(2016) F. Qiao et al.   AQUACULTURE NUTRITION

The Underlying Ecological Processes of Gut Microbiota Among Cohabitating Retarded, Overgrown and Normal Shrimp

(2016) Jinbo Xiong et al.   MICROBIAL ECOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Benefits of short-chain fatty acids and their receptors in inflammation and carcinogenesis

(2016) Sathish Sivaprakasam et al.   PHARMACOLOGY & THERAPEUTICS

qPCR assay for detecting and quantifying a virulence plasmid in acute hepatopancreatic necrosis disease (AHPND) due to pathogenic Vibrio parahaemolyticus

(2015) Jee Eun Han et al.   AQUACULTURE

The gut microbiome in health and in disease

(2015) Andrew B. Shreiner et al.   CURRENT OPINION IN GASTROENTEROLOGY

Photorhabdus insect-related (Pir) toxin-like genes in a plasmid of Vibrio parahaemolyticus, the causative agent of acute hepatopancreatic necrosis disease (AHPND) of shrimp

(2015) JE Han et al.   DISEASES OF AQUATIC ORGANISMS

Pathogenesis of acute hepatopancreatic necrosis disease (AHPND) in shrimp

(2015) Hung-Chiao Lai et al.   FISH & SHELLFISH IMMUNOLOGY

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The opportunistic marine pathogenVibrio parahaemolyticusbecomes virulent by acquiring a plasmid that expresses a deadly toxin

(2015) Chung-Te Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of Host Phylogeny and Habitats on Gut Microbiomes of Oriental River Prawn (Macrobrachium nipponense)

(2015) Tzong-Der Tzeng et al.   PLoS One

Field and Experimental Evidence of Vibrio parahaemolyticus as the Causative Agent of Acute Hepatopancreatic Necrosis Disease of Cultured Shrimp (Litopenaeus vannamei) in Northwestern Mexico

(2014) Sonia A. Soto-Rodriguez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Changes in the intestinal bacterial community during the growth of white shrimp,Litopenaeus vannamei

(2014) Zhaobin Huang et al.   AQUACULTURE RESEARCH

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

(2014) Dirk Gevers et al.   Cell Host & Microbe

The HLA-DQ2 genotype selects for early intestinal microbiota composition in infants at high risk of developing coeliac disease

(2014) M Olivares et al.   GUT

Characterization of the gut microbiota of three commercially valuable warmwater fish species

(2014) A.M. Larsen et al.   JOURNAL OF APPLIED MICROBIOLOGY

Understanding the role of gut microbiome in metabolic disease risk

(2014) Yolanda Sanz et al.   PEDIATRIC RESEARCH

Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish

(2013) Lin Ye et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Microbiota Regulate Intestinal Absorption and Metabolism of Fatty Acids in the Zebrafish

(2012) Ivana Semova et al.   Cell Host & Microbe

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Butyrate and Propionate Protect against Diet-Induced Obesity and Regulate Gut Hormones via Free Fatty Acid Receptor 3-Independent Mechanisms

(2012) Hua V. Lin et al.   PLoS One

Propionate. Anti-obesity and satiety enhancing factor?

(2011) Tulika Arora et al.   APPETITE

Infaunal Burrows Are Enrichment Zones for Vibrio parahaemolyticus

(2011) Megan D. Gamble et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers

(2011) Tingting Wang et al.   ISME Journal

Vibrio parahaemolyticus cell biology and pathogenicity determinants

(2011) Christopher A. Broberg et al.   MICROBES AND INFECTION

Propionate as a health-promoting microbial metabolite in the human gut

(2011) Elham Hosseini et al.   NUTRITION REVIEWS

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Pyrosequencing of 16S rRNA gene amplicons to study the microbiota in the gastrointestinal tract of carp (Cyprinus carpio L.)

(2011) Maartje AHJ van Kessel et al.   AMB Express

Intestinal dysbiosis and reduced immunoglobulin-coated bacteria associated with coeliac disease in children

(2010) Giada De Palma et al.   BMC MICROBIOLOGY

The role of mucosal immunity and host genetics in defining intestinal commensal bacteria

(2010) Jonathan Hansen et al.   CURRENT OPINION IN GASTROENTEROLOGY

Luminal and mucosal-associated intestinal microbiota in patients with diarrhea-predominant irritable bowel syndrome

(2010) Ian M Carroll et al.   Gut Pathogens

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Microbial community analysis reveals high level phylogenetic alterations in the overall gastrointestinal microbiota of diarrhoea-predominant irritable bowel syndrome sufferers

(2009) Lotta Krogius-Kurikka et al.   BMC GASTROENTEROLOGY