Runs of homozygosity provide a genome landscape picture of inbreeding and genetic history of European autochthonous and commercial pig breeds

Comparative evaluation of genomic inbreeding parameters in seven commercial and autochthonous pig breeds

(2020) G. Schiavo et al.   Animal

How to study runs of homozygosity using PLINK? A guide for analyzing medium density SNP data in livestock and pet species

(2020) R. Meyermans et al.   BMC GENOMICS

Genome‐wide detection of copy number variants in European autochthonous and commercial pig breeds by whole‐genome sequencing of DNA pools identified breed‐characterising copy number states

(2020) S. Bovo et al.   ANIMAL GENETICS

Runs of homozygosity islands in Italian cosmopolitan and autochthonous pig breeds identify selection signatures in the porcine genome

(2020) Giuseppina Schiavo et al.   Livestock Science

High-resolution population structure and runs of homozygosity reveal the genetic architecture of complex traits in the Lipizzan horse

(2019) Gertrud Grilz-Seger et al.   BMC GENOMICS

Analysis of ROH patterns in the Noriker horse breed reveals signatures of selection for coat color and body size

(2019) G. Grilz‐Seger et al.   ANIMAL GENETICS

Genomic diversity, linkage disequilibrium and selection signatures in European local pig breeds assessed with a high density SNP chip

(2019) M. Muñoz et al.   Scientific Reports

SNP genotypes reveal breed substructure, selection signatures and highly inbred regions in Piétrain pigs

(2019) W. Gorssen et al.   ANIMAL GENETICS

Genome-wide identification of runs of homozygosity islands and associated genes in local dairy cattle breeds

(2018) S. Mastrangelo et al.   Animal

Runs of homozygosity: windows into population history and trait architecture

(2018) Francisco C. Ceballos et al.   NATURE REVIEWS GENETICS

Autozygosity islands and ROH patterns in Nellore lineages: evidence of selection for functionally important traits

(2018) Elisa Peripolli et al.   BMC GENOMICS

Runs of homozygosity and population history of three horse breeds with small population size

(2018) G. Grilz-Seger et al.   JOURNAL OF EQUINE VETERINARY SCIENCE

Distribution of runs of homozygosity in Chinese and Western pig breeds evaluated by reduced-representation sequencing data

(2018) Zhe Zhang et al.   ANIMAL GENETICS

Diversity across major and candidate genes in European local pig breeds

(2018) María Muñoz et al.   PLoS One

The distribution of runs of homozygosity and selection signatures in six commercial meat sheep breeds

(2017) Deirdre C. Purfield et al.   PLoS One

Runs of homozygosity: current knowledge and applications in livestock

(2016) E. Peripolli et al.   ANIMAL GENETICS

Meiotic recombination shapes precision of pedigree- and marker-based estimates of inbreeding

(2016) U Knief et al.   HEREDITY

Characteristics of runs of homozygosity in selected cattle breeds maintained in Poland

(2016) Tomasz Szmatoła et al.   Livestock Science

Pedigrees or markers: Which are better in estimating relatedness and inbreeding coefficient?

(2016) Jinliang Wang   THEORETICAL POPULATION BIOLOGY

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data

(2015) Mario Barbato et al.   Frontiers in Genetics

Analysis of runs of homozygosity and their relationship with inbreeding in five cattle breeds farmed in Italy

(2014) Gabriele Marras et al.   ANIMAL GENETICS

A genomewide association study for average daily gain in Italian Large White pigs1

(2014) L. Fontanesi et al.   JOURNAL OF ANIMAL SCIENCE

A gene signature based method for identifying subtypes and subtype-specific drivers in cancer with an application to medulloblastoma

(2013) Peikai Chen et al.   BMC BIOINFORMATICS

Measuring inbreeding and inbreeding depression on pig growth from pedigree or SNP-derived metrics

(2013) L. Silió et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Identification and association analysis of several hundred single nucleotide polymorphisms within candidate genes for back fat thickness in Italian Large White pigs using a selective genotyping approach1

(2012) L. Fontanesi et al.   JOURNAL OF ANIMAL SCIENCE

Strong signatures of selection in the domestic pig genome

(2012) C.-J. Rubin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of a second gene associated with variation in vertebral number in domestic pigs

(2011) Satoshi Mikawa et al.   BMC GENETICS

Harmful recessive effects on fertility detected by absence of homozygous haplotypes

(2011) P.M. VanRaden et al.   JOURNAL OF DAIRY SCIENCE

Application of DNA markers in parentage verification of Boran cattle in Kenya

(2011) David Kios et al.   TROPICAL ANIMAL HEALTH AND PRODUCTION

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genomic Runs of Homozygosity Record Population History and Consanguinity

(2010) Mirna Kirin et al.   PLoS One

The genetics of inbreeding depression

(2009) Deborah Charlesworth et al.   NATURE REVIEWS GENETICS

Research on inbreeding in the ‘omic’ era

(2009) Torsten N. Kristensen et al.   TRENDS IN ECOLOGY & EVOLUTION

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

The value of DNA paternity identification in beef cattle: Examples from Nevada's free-range ranches1

(2007) L. Gomez-Raya et al.   JOURNAL OF ANIMAL SCIENCE