Gene reuse facilitates rapid radiation and independent adaptation to diverse habitats in the Asian honeybee

Recent advances in neuropeptide signaling in Drosophila, from genes to physiology and behavior

(2019) Dick R. Nässel et al.   PROGRESS IN NEUROBIOLOGY

Cellular functions of long noncoding RNAs

(2019) Run-Wen Yao et al.   NATURE CELL BIOLOGY

Genetic Differentiation of Eastern Honey Bee (Apis cerana) Populations Across Qinghai-Tibet Plateau-Valley Landforms

(2019) Yinglong Yu et al.   Frontiers in Genetics

Individual and Colony Level Foraging Decisions of Bumble Bees and Honey Bees in Relation to Balancing of Nutrient Needs

(2019) Harmen P. Hendriksma et al.   Frontiers in Ecology and Evolution

A Multiscale Review of Behavioral Variation in Collective Foraging Behavior in Honey Bees

(2019) Natalie J. Lemanski et al.   Insects

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

OUP accepted manuscript

(2018)   BIOINFORMATICS

Population genomics provide insights into the evolution and adaptation of the eastern honey bee (Apis cerana)

(2018) Chao Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Efficient Computation of the Joint Sample Frequency Spectra for Multiple Populations

(2017) John A. Kamm et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Two extended haplotype blocks are associated with adaptation to high altitude habitats in East African honey bees

(2017) Andreas Wallberg et al.   PLoS Genetics

Climate change and ecosystem composition across large landscapes

(2016) Michael D. Jennings et al.   LANDSCAPE ECOLOGY

Robust and scalable inference of population history from hundreds of unphased whole genomes

(2016) Jonathan Terhorst et al.   NATURE GENETICS

Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing

(2015) Doori Park et al.   BMC GENOMICS

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera

(2014) Andreas Wallberg et al.   NATURE GENETICS

ENMeval: An R package for conducting spatially independent evaluations and estimating optimal model complexity forMaxentecological niche models

(2014) Robert Muscarella et al.   Methods in Ecology and Evolution

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

(2013) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

(2013) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

Molecular evolution of peptidergic signaling systems in bilaterians

(2013) O. Mirabeau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Management increases genetic diversity of honey bees via admixture

(2012) BROCK A. HARPUR et al.   MOLECULAR ECOLOGY

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

NetView: A High-Definition Network-Visualization Approach to Detect Fine-Scale Population Structures from Genome-Wide Patterns of Variation

(2012) Markus Neuditschko et al.   PLoS One

Floral humidity as a reliable sensory cue for profitability assessment by nectar-foraging hawkmoths

(2012) M. von Arx et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The probability of genetic parallelism and convergence in natural populations

(2012) G. L. Conte et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

SHRiMP2: Sensitive yet Practical Short Read Mapping

(2011) Matei David et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Robust relationship inference in genome-wide association studies

(2010) Ani Manichaikul et al.   BIOINFORMATICS

The Leucokinin Pathway and Its Neurons Regulate Meal Size in Drosophila

(2010) Bader Al-Anzi et al.   CURRENT BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

MorphoJ: an integrated software package for geometric morphometrics

(2010) CHRISTIAN PETER KLINGENBERG   Molecular Ecology Resources

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Global pollinator declines: trends, impacts and drivers

(2010) Simon G. Potts et al.   TRENDS IN ECOLOGY & EVOLUTION

Effects of patriline on gustatory responsiveness and olfactory learning in honey bees

(2009) Ricarda Scheiner et al.   APIDOLOGIE

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Genetic and genomic analyses of the division of labour in insect societies

(2008) Chris R. Smith et al.   NATURE REVIEWS GENETICS