Niche dimensions of a marine bacterium are identified using invasion studies in coastal seawater

Niche differentiation is spatially and temporally regulated in the rhizosphere

(2020) Erin E. Nuccio et al.   ISME Journal

Ecological drivers of bacterial community assembly in synthetic phycospheres

(2020) He Fu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Model Roseobacter, Ruegeria pomeroyi DSS-3, Employs a Diffusible Killing Mechanism To Eliminate Competitors

(2020) Garrett C. Sharpe et al.   mSystems

Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems

(2019) Alan R. Pacheco et al.   Nature Communications

GToTree: a user-friendly workflow for phylogenomics

(2019) Michael D Lee   BIOINFORMATICS

N-Acyl Homoserine Lactone Derived Tetramic Acids Impair Photosynthesis in Phaeodactylum tricornutum

(2019) Frederike Stock et al.   ACS Chemical Biology

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Towards Integrating Evolution, Metabolism, and Climate Change Studies of Marine Ecosystems

(2019) Federico Baltar et al.   TRENDS IN ECOLOGY & EVOLUTION

Composite Metagenome-Assembled Genomes Reduce the Quality of Public Genome Repositories

(2019) Alon Shaiber et al.   mBio

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom

(2019) Brent Nowinski et al.   Scientific Data

Determining Microbial Niche Breadth in the Environment for Better Ecosystem Fate Predictions

(2019) Emilie E. L. Muller   mSystems

Genome‐resolved metagenomics and metatranscriptomics reveal niche differentiation in functionally redundant microbial communities at deep‐sea hydrothermal vents

(2019) David Galambos et al.   ENVIRONMENTAL MICROBIOLOGY

Unprecedented DMSP Concentrations in a Massive Dinoflagellate Bloom in Monterey Bay, CA

(2019) Ronald P. Kiene et al.   GEOPHYSICAL RESEARCH LETTERS

Short-term estimates of phytoplankton growth and mortality in a tidal estuary

(2018) Sean R. Anderson et al.   LIMNOLOGY AND OCEANOGRAPHY

Next-generation experiments linking community structure and ecosystem functioning

(2018) Thomas Bell   Environmental Microbiology Reports

Bacterial transcriptome remodeling during sequential co-culture with a marine dinoflagellate and diatom

(2017) Marine Landa et al.   ISME Journal

Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents

(2017) Dimitri V Meier et al.   ISME Journal

Mass mortality of marine birds in the Northeast Pacific caused by Akashiwo sanguinea

(2017) T Jones et al.   MARINE ECOLOGY PROGRESS SERIES

Reconstructing Ecological Niche Evolution When Niches Are Incompletely Characterized

(2017) Erin E Saupe et al.   SYSTEMATIC BIOLOGY

Mass mortality of marine birds in the Northeast Pacific caused by Akashiwo sanguinea

(2017) T Jones et al.   MARINE ECOLOGY PROGRESS SERIES

Transcriptional Control in Marine Copiotrophic and Oligotrophic Bacteria with Streamlined Genomes

(2016) Matthew T. Cottrell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Influence of the Mississippi River plume and non-bioavailable DMSP on dissolved DMSP turnover in the northern Gulf of Mexico

(2016) Jessie Motard-C�t� et al.   Environmental Chemistry

Feeding on compatible solutes: A substrate-induced pathway for uptake and catabolism of ectoines and its genetic control by EnuR

(2016) Annina Schulz et al.   ENVIRONMENTAL MICROBIOLOGY

Spatio-Temporal Interdependence of Bacteria and Phytoplankton during a Baltic Sea Spring Bloom

(2016) Carina Bunse et al.   Frontiers in Microbiology

Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria

(2015) S. A. Amin et al.   NATURE

Microbial Invasions: The Process, Patterns, and Mechanisms

(2015) Cyrus Alexander Mallon et al.   TRENDS IN MICROBIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Evolutionary Ecology of the Marine Roseobacter Clade

(2014) Haiwei Luo et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria

(2014) J. Palovaara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria

(2014) I. Lidbury et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Antagonistic Interactions Mediated by Marine Bacteria: The Role of Small Molecules

(2013) Matthias Wietz et al.   JOURNAL OF CHEMICAL ECOLOGY

Pattern and synchrony of gene expression among sympatric marine microbial populations

(2013) E. A. Ottesen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread Production of Extracellular Superoxide by Heterotrophic Bacteria

(2013) J. M. Diaz et al.   SCIENCE

Impact of diatom-diazotroph associations on carbon export in the Amazon River plume

(2012) Laurence Y. Yeung et al.   GEOPHYSICAL RESEARCH LETTERS

Expression patterns reveal niche diversification in a marine microbial assemblage

(2012) Scott M Gifford et al.   ISME Journal

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss

(2012) J. J. Morris et al.   mBio

Transcriptional Changes Underlying Elemental Stoichiometry Shifts in a Marine Heterotrophic Bacterium

(2012) Leong-Keat Chan et al.   Frontiers in Microbiology

The Role of B Vitamins in Marine Biogeochemistry

(2011) Sergio A. Sañudo-Wilhelmy et al.   Annual Review of Marine Science

Molecular genetics and biochemistry of N-acetyltaurine degradation by Cupriavidus necator H16

(2011) K. Denger et al.   MICROBIOLOGY-SGM

Dependence of the Cyanobacterium Prochlorococcus on Hydrogen Peroxide Scavenging Microbes for Growth at the Ocean's Surface

(2011) J. Jeffrey Morris et al.   PLoS One

Anoxygenic photosynthesis and photooxidative stress: a particular challenge for Roseobacter

(2010) Bork Ansgar Berghoff et al.   ENVIRONMENTAL MICROBIOLOGY

Overlapping Alternative Sigma Factor Regulons in the Response to Singlet Oxygen in Rhodobacter sphaeroides

(2010) A. M. Nuss et al.   JOURNAL OF BACTERIOLOGY

Experimental niche evolution alters the strength of the diversity–productivity relationship

(2010) Dominique Gravel et al.   NATURE

The role of nutrients in regulation and promotion of harmful algal blooms in upwelling systems

(2010) R.M. Kudela et al.   PROGRESS IN OCEANOGRAPHY

High Frequency of Horizontal Gene Transfer in the Oceans

(2010) L. D. McDaniel et al.   SCIENCE

Gene Clusters Involved in Isethionate Degradation by Terrestrial and Marine Bacteria

(2009) S. Weinitschke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

High abundance of virulence gene homologues in marine bacteria

(2009) Olof P. Persson et al.   ENVIRONMENTAL MICROBIOLOGY

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

Inhibition of Bacterial Ribosome Assembly: a Suitable Drug Target?

(2009) B. A. Maguire   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

(2009) Willm Martens-Habbena et al.   NATURE

Mass Stranding of Marine Birds Caused by a Surfactant-Producing Red Tide

(2009) David A. Jessup et al.   PLoS One

Hutchinson's duality: The once and future niche

(2009) R. K. Colwell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bringing the Hutchinsonian niche into the 21st century: Ecological and evolutionary perspectives

(2009) R. D. Holt   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Occurrence and Expression of Gene Transfer Agent Genes in Marine Bacterioplankton

(2008) E. J. Biers et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea

(2008) Craig A Carlson et al.   ISME Journal

Bacterial carbon processing by generalist species in the coastal ocean

(2008) Xiaozhen Mou et al.   NATURE