Identifying DNA-binding proteins by combining support vector machine and PSSM distance transformation
出版年份 2015 全文链接
标题
Identifying DNA-binding proteins by combining support vector machine and PSSM distance transformation
作者
关键词
DNA-binding protein, position specific score matrix, support vector machine, distance transformation
出版物
BMC Systems Biology
Volume 9, Issue Suppl 1, Pages S10
出版商
Springer Nature
发表日期
2015-06-19
DOI
10.1186/1752-0509-9-s1-s10
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition
- (2014) Shou-Hui Guo et al. BIOINFORMATICS
- nDNA-prot: identification of DNA-binding proteins based on unbalanced classification
- (2014) Li Song et al. BMC BIOINFORMATICS
- Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis
- (2014) Hui Ding et al. Molecular BioSystems
- Sequence Based Prediction of DNA-Binding Proteins Based on Hybrid Feature Selection Using Random Forest and Gaussian Naïve Bayes
- (2014) Wangchao Lou et al. PLoS One
- iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition
- (2014) Bin Liu et al. PLoS One
- iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition
- (2013) Peng-Mian Feng et al. ANALYTICAL BIOCHEMISTRY
- iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types
- (2013) Xuan Xiao et al. ANALYTICAL BIOCHEMISTRY
- Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection
- (2013) Bin Liu et al. BIOINFORMATICS
- An improved sequence based prediction protocol for DNA-binding proteins using SVM and comprehensive feature analysis
- (2013) Chuanxin Zou et al. BMC BIOINFORMATICS
- Survey of MapReduce frame operation in bioinformatics
- (2013) Q. Zou et al. BRIEFINGS IN BIOINFORMATICS
- Sequence-specific inhibition of Dicer measured with a force-based microarray for RNA ligands
- (2013) Katja Limmer et al. NUCLEIC ACIDS RESEARCH
- Hierarchical Classification of Protein Folds Using a Novel Ensemble Classifier
- (2013) Chen Lin et al. PLoS One
- DNA-Prot: Identification of DNA Binding Proteins from Protein Sequence Information using Random Forest
- (2012) K. Krishna. Kumar et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- Using Amino Acid Physicochemical Distance Transformation for Fast Protein Remote Homology Detection
- (2012) Bin Liu et al. PLoS One
- iNuc-PhysChem: A Sequence-Based Predictor for Identifying Nucleosomes via Physicochemical Properties
- (2012) Wei Chen et al. PLoS One
- Prediction of Lysine Ubiquitylation with Ensemble Classifier and Feature Selection
- (2011) Xiaowei Zhao et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- An Improved Profile-Level Domain Linker Propensity Index for Protein Domain Boundary Prediction.
- (2011) Yanfeng Zhang et al. PROTEIN AND PEPTIDE LETTERS
- Predicting protein–protein interactions from protein sequences using meta predictor
- (2010) Jun-Feng Xia et al. AMINO ACIDS
- iDBPs: a web server for the identification of DNA binding proteins
- (2010) Guy Nimrod et al. BIOINFORMATICS
- An accurate feature-based method for identifying DNA-binding residues on protein surfaces
- (2010) Yi Xiong et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Prediction of mitochondrial proteins of malaria parasite using split amino acid composition and PSSM profile
- (2009) Ruchi Verma et al. AMINO ACIDS
- A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation
- (2009) Qiwen Dong et al. BIOINFORMATICS
- Prediction of protein binding sites in protein structures using hidden Markov support vector machine
- (2009) Bin Liu et al. BMC BIOINFORMATICS
- Exploiting three kinds of interface propensities to identify protein binding sites
- (2009) Bin Liu et al. COMPUTATIONAL BIOLOGY AND CHEMISTRY
- Predicting DNA- and RNA-binding proteins from sequences with kernel methods
- (2009) Xiaojian Shao et al. JOURNAL OF THEORETICAL BIOLOGY
- Prediction of interactiveness of proteins and nucleic acids based on feature selections
- (2009) YouLang Yuan et al. MOLECULAR DIVERSITY
- The role of DNA shape in protein–DNA recognition
- (2009) Remo Rohs et al. NATURE
- Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks
- (2009) Munazah Andrabi et al. BMC STRUCTURAL BIOLOGY
- A Threading-Based Method for the Prediction of DNA-Binding Proteins with Application to the Human Genome
- (2009) Mu Gao et al. PLoS Computational Biology
- Combing ontologies and dipeptide composition for predicting DNA-binding proteins
- (2008) Loris Nanni et al. AMINO ACIDS
- HSEpred: predict half-sphere exposure from protein sequences
- (2008) Jiangning Song et al. BIOINFORMATICS
- A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis
- (2008) Bin Liu et al. BMC BIOINFORMATICS
- The complete genome of an individual by massively parallel DNA sequencing
- (2008) David A. Wheeler et al. NATURE
- DBD-Hunter: a knowledge-based method for the prediction of DNA–protein interactions
- (2008) Mu Gao et al. NUCLEIC ACIDS RESEARCH
- Single-Molecule DNA Sequencing of a Viral Genome
- (2008) T. D. Harris et al. SCIENCE
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