Genome Assembly and Transcriptome Analysis of the Fungus Coniella diplodiella During Infection on Grapevine (Vitis vinifera L.)

Identification of the defense-related gene VdWRKY53 from the wild grapevine Vitis davidii using RNA sequencing and ectopic expression analysis in Arabidopsis

(2019) Ying Zhang et al.   HEREDITAS

Engineering Broad-Spectrum Bacterial Blight Resistance by Simultaneously Disrupting Variable TALE-binding Elements of Multiple Susceptibility Genes in Rice

(2019) Zhengyin Xu et al.   Molecular Plant

Candidate genes for grape white rot resistance based on SMRT and Illumina sequencing

(2019) Kai Su et al.   BMC PLANT BIOLOGY

Bioinformatic prediction of plant–pathogenicity effector proteins of fungi

(2018) Darcy AB Jones et al.   CURRENT OPINION IN MICROBIOLOGY

Valsa mali Pathogenic Effector VmPxE1 Contributes to Full Virulence and Interacts With the Host Peroxidase MdAPX1 as a Potential Target

(2018) Mian Zhang et al.   Frontiers in Microbiology

Impact of Chemical and Biological Fungicides Applied to Grapevine on Grape Biofilm, Must, and Wine Microbial Diversity

(2018) Rocío Escribano-Viana et al.   Frontiers in Microbiology

Whole-Genome Resequencing and Pan-Transcriptome Reconstruction Highlight the Impact of Genomic Structural Variation on Secondary Metabolite Gene Clusters in the Grapevine Esca Pathogen Phaeoacremonium minimum

(2018) Mélanie Massonnet et al.   Frontiers in Microbiology

Genome-Wide Identification and Expression Analysis of Cutinase Gene Family in Rhizoctonia cerealis and Functional Study of an Active Cutinase RcCUT1 in the Fungal–Wheat Interaction

(2018) Lin Lu et al.   Frontiers in Microbiology

Azaphilone Derivatives from the Fungus Coniella fragariae Inhibit NF-κB Activation and Reduce Tumor Cell Migration

(2018) Haiqian Yu et al.   JOURNAL OF NATURAL PRODUCTS

Establishment of CRISPR/Cas9 in Alternaria alternata

(2017) Maximilian Wenderoth et al.   FUNGAL GENETICS AND BIOLOGY

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Effectors of Filamentous Plant Pathogens: Commonalities amid Diversity

(2017) Marina Franceschetti et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

A cryptic pigment biosynthetic pathway uncovered by heterologous expression is essential for conidial development in Pestalotiopsis fici

(2017) Peng Zhang et al.   MOLECULAR MICROBIOLOGY

Coniella lustricola, a new species from submerged detritus

(2017) Daniel B. Raudabaugh et al.   MYCOLOGICAL PROGRESS

Evolution and genome architecture in fungal plant pathogens

(2017) Mareike Möller et al.   NATURE REVIEWS MICROBIOLOGY

Coniella vitis sp. nov. Is the Common Pathogen of White Rot in Chinese Vineyards

(2017) K. W. T. Chethana et al.   PLANT DISEASE

Genome-wide assessment of population structure, linkage disequilibrium and resistant QTLs in Chinese wild grapevine

(2017) Ying Zhang et al.   SCIENTIA HORTICULTURAE

SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data

(2017) Yuxin Chen et al.   GigaScience

Revising the Schizoparmaceae: Coniella and its synonyms Pilidiella and Schizoparme

(2016) L.V. Alvarez et al.   STUDIES IN MYCOLOGY

Grapevine Pathogenic Microorganisms: Understanding Infection Strategies and Host Response Scenarios

(2016) Grace Armijo et al.   Frontiers in Plant Science

Fungal Effectors and Plant Susceptibility

(2015) Libera Lo Presti et al.   Annual Review of Plant Biology

Antifungal activity and biocontrol potential ofPaenibacillus polymyxaHT16 against white rot pathogen (Coniella diplodiellaSpeq.) in table grapes

(2015) Junhua Han et al.   BIOCONTROL SCIENCE AND TECHNOLOGY

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

DHN melanin biosynthesis in the plant pathogenic fungusBotrytis cinereais based on two developmentally regulated key enzyme (PKS)-encoding genes

(2015) Julia Schumacher   MOLECULAR MICROBIOLOGY

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

(2015) Konstantin Berlin et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Genome sequence ofValsacanker pathogens uncovers a potential adaptation of colonization of woody bark

(2015) Zhiyuan Yin et al.   NEW PHYTOLOGIST

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

Candidate effector proteins of the necrotrophic apple canker pathogen Valsa mali can suppress BAX-induced PCD

(2015) Zhengpeng Li et al.   Frontiers in Plant Science

Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors

(2015) Jana Sperschneider et al.   Frontiers in Plant Science

Secondary metabolites in fungus-plant interactions

(2015) Tünde Pusztahelyi et al.   Frontiers in Plant Science

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Correction: Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

(2014) Zhongtao Zhao et al.   BMC GENOMICS

Effectors as Tools in Disease Resistance Breeding Against Biotrophic, Hemibiotrophic, and Necrotrophic Plant Pathogens

(2014) Vivianne G. A. A. Vleeshouwers et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The role of effectors and host immunity in plant–necrotrophic fungal interactions

(2014) Xuli Wang et al.   Virulence

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cell Death Control: The Interplay of Apoptosis and Autophagy in the Pathogenicity of Sclerotinia sclerotiorum

(2013) Mehdi Kabbage et al.   PLoS Pathogens

Phytopathogen Effectors Subverting Host Immunity: Different Foes, Similar Battleground

(2012) Daolong Dou et al.   Cell Host & Microbe

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Regulation of fungal secondary metabolism

(2012) Axel A. Brakhage   NATURE REVIEWS MICROBIOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Transcriptional Programming and Functional Interactions within thePhytophthora sojaeRXLR Effector Repertoire

(2011) Qunqing Wang et al.   PLANT CELL

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH

Conserved C-Terminal Motifs Required for Avirulence and Suppression of Cell Death by Phytophthora sojae effector Avr1b

(2008) D. Dou et al.   PLANT CELL

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY