Genome sequence ofValsacanker pathogens uncovers a potential adaptation of colonization of woody bark

Transcriptome profiling to identify genes involved in pathogenicity of Valsa mali on apple tree

(2014) Xiwang Ke et al.   FUNGAL GENETICS AND BIOLOGY

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

RepARK—de novo creation of repeat libraries from whole-genome NGS reads

(2014) Philipp Koch et al.   NUCLEIC ACIDS RESEARCH

Delimiting cryptic pathogen species causing apple Valsa canker with multilocus data

(2014) Xuli Wang et al.   Ecology and Evolution

Human and Plant Fungal Pathogens: The Role of Secondary Metabolites

(2014) Daniel H. Scharf et al.   PLoS Pathogens

Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily

(2013) Jonathan M. Goldberg et al.   BIOINFORMATICS

Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

(2013) Zhongtao Zhao et al.   BMC GENOMICS

Differential Activation of Ammonium Transporters During the Accumulation of Ammonia by Colletotrichum gloeosporioides and Its Effect on Appressoria Formation and Pathogenicity

(2013) Chen Shnaiderman et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Transporter Classification Database

(2013) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

(2013) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

Strategies for Wheat Stripe Rust Pathogenicity Identified by Transcriptome Sequencing

(2013) Diana P. Garnica et al.   PLoS One

Validation of reference genes for gene expression analysis in Valsa mali var. mali using real-time quantitative PCR

(2013) Zhiyuan Yin et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

(2013) Kathryn E. Bushley et al.   PLoS Genetics

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Histological and cytological investigations of the infection and colonization of apple bark by Valsa mali var. mali

(2012) Xiwang Ke et al.   AUSTRALASIAN PLANT PATHOLOGY

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data

(2012) Jianxing Feng et al.   BIOINFORMATICS

Nonanolides of Natural Origin: Structure, Synthesis, and Biological Activity

(2012) P. Sun et al.   CURRENT MEDICINAL CHEMISTRY

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)

(2012) Yang Dong et al.   NATURE BIOTECHNOLOGY

Regulation of fungal secondary metabolism

(2012) Axel A. Brakhage   NATURE REVIEWS MICROBIOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

The Natural Product Domain Seeker NaPDoS: A Phylogeny Based Bioinformatic Tool to Classify Secondary Metabolite Gene Diversity

(2012) Nadine Ziemert et al.   PLoS One

The genome of Prunus mume

(2012) Qixiang Zhang et al.   Nature Communications

Comparative Analysis of the Genomes of Two Field Isolates of the Rice Blast Fungus Magnaporthe oryzae

(2012) Minfeng Xue et al.   PLoS Genetics

Sequential Delivery of Host-Induced Virulence Effectors by Appressoria and Intracellular Hyphae of the Phytopathogen Colletotrichum higginsianum

(2012) Jochen Kleemann et al.   PLoS Pathogens

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

(2012) Robin A. Ohm et al.   PLoS Pathogens

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Plant pathogens as a source of diverse enzymes for lignocellulose digestion

(2011) Donna M Gibson et al.   CURRENT OPINION IN MICROBIOLOGY

Cytospolides A-E, New Nonanolides from an Endophytic Fungus, Cytospora sp.

(2011) Shan Lu et al.   EUROPEAN JOURNAL OF ORGANIC CHEMISTRY

Bioactive Nonanolide Derivatives Isolated from the Endophytic FungusCytosporasp.

(2011) Shan Lu et al.   JOURNAL OF ORGANIC CHEMISTRY

Secreted glutamic protease rescues aspartic protease Pep deficiency in Aspergillus fumigatus during growth in acidic protein medium

(2011) D. Sriranganadane et al.   MICROBIOLOGY-SGM

Re-evaluation of pathogens causing Valsa canker on apple in China

(2011) Xuli Wang et al.   MYCOLOGIA

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

(2011) Stephen B. Goodwin et al.   PLoS Genetics

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

(2011) Joelle Amselem et al.   PLoS Genetics

A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi

(2011) James K Hane et al.   GENOME BIOLOGY

Tomato Cf resistance proteins mediate recognition of cognate homologous effectors from fungi pathogenic on dicots and monocots

(2010) I. Stergiopoulos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

The ABC transporter BcatrB fromBotrytis cinereaexports camalexin and is a virulence factor onArabidopsis thaliana

(2009) Francesca L. Stefanato et al.   PLANT JOURNAL

Genome, transcriptome, and secretome analysis of wood decay fungusPostia placentasupports unique mechanisms of lignocellulose conversion

(2009) Diego Martinez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fungal LysM effectors: extinguishers of host immunity?

(2009) Ronnie de Jonge et al.   TRENDS IN MICROBIOLOGY

Module evolution and substrate specificity of fungal nonribosomal peptide synthetases involved in siderophore biosynthesis

(2008) Kathryn E Bushley et al.   BMC EVOLUTIONARY BIOLOGY

Aspergillus westerdijkiae polyketide synthase gene “aoks1” is involved in the biosynthesis of ochratoxin A

(2008) N BACHA et al.   FUNGAL GENETICS AND BIOLOGY

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Drug:H+ antiporters in chemical stress response in yeast

(2008) Isabel Sá-Correia et al.   TRENDS IN MICROBIOLOGY

The SLC16 monocaboxylate transporter family

(2008) D. Meredith et al.   XENOBIOTICA

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY