Identification and functional prediction of long intergenic noncoding RNAs in fetal porcine longissimus dorsi muscle

Circ-ZNF609 regulates G1-S progression in rhabdomyosarcoma

(2019) Francesca Rossi et al.   ONCOGENE

Genome-wide identification and characterization of long noncoding and circular RNAs in germline stem cells

(2019) Xiaoyong Li et al.   Scientific Data

Analysis of allele-specific expression of seven candidate genes involved in lipid metabolism in pig skeletal muscle and fat tissues reveals allelic imbalance of ACACA, LEP, SCD, and TNF

(2019) Monika Stachowiak et al.   JOURNAL OF APPLIED GENETICS

Dysregulation of Circular RNAs in Myotonic Dystrophy Type 1

(2019) Voellenkle et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Neuropilin-1 Regulates the Secondary CD8 T Cell Response to Virus Infection

(2019) Ji Young Hwang et al.   mSphere

Neuropilin 1 mediates epicardial activation and revascularization in the regenerating zebrafish heart

(2019) Vanessa Lowe et al.   DEVELOPMENT

Comparative transcriptomic analysis of skeletal muscle tissue during prenatal stages in Tongcheng and Yorkshire pig using RNA-seq

(2018) Huijing Liu et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Identification of transcribed protein coding sequence remnants within lincRNAs

(2018) Sweta Talyan et al.   NUCLEIC ACIDS RESEARCH

Identification and Functional Analysis of Long Intergenic Non-coding RNAs Underlying Intramuscular Fat Content in Pigs

(2018) Cheng Zou et al.   Frontiers in Genetics

A novel long non-coding RNA, lncKBTBD10, involved in bovine skeletal muscle myogenesis

(2018) Mingming Chen et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL

Characterization of Critical Functions of Long Non-Coding RNAs and mRNAs in Rhabdomyosarcoma Cells and Mouse Skeletal Muscle Infected by Enterovirus 71 Using RNA-Seq

(2018) Ying Li et al.   Viruses-Basel

Genome-wide epigenetic landscape of pig lincRNAs and their evolution during porcine domestication

(2018) Cencen Li et al.   Epigenomics

Circ-ZNF609 Is a Circular RNA that Can Be Translated and Functions in Myogenesis

(2017) Ivano Legnini et al.   MOLECULAR CELL

The New RNA World: Growing Evidence for Long Noncoding RNA Functionality

(2017) Allison Jandura et al.   TRENDS IN GENETICS

Mining long noncoding RNA in livestock

(2016) R. Weikard et al.   ANIMAL GENETICS

Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

(2015) Kyle M. Schachtschneider et al.   BMC GENOMICS

Dynamic transcriptome profiles of skeletal muscle tissue across 11 developmental stages for both Tongcheng and Yorkshire pigs

(2015) Yuqiang Zhao et al.   BMC GENOMICS

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

A Splice Mutation in the PHKG1 Gene Causes High Glycogen Content and Low Meat Quality in Pig Skeletal Muscle

(2014) Junwu Ma et al.   PLoS Genetics

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data

(2012) Jianxing Feng et al.   BIOINFORMATICS

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

(2011) A. Pauli et al.   GENOME RESEARCH

Database resources of the National Center for Biotechnology Information

(2011) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

MyoD control of SKIP expression during pig skeletal muscle development

(2010) Q. Xiong et al.   MOLECULAR BIOLOGY REPORTS

Single base–resolution methylome of the silkworm reveals a sparse epigenomic map

(2010) Hui Xiang et al.   NATURE BIOTECHNOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS