DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

(2021) Jack Hearn et al.   Epigenetics & Chromatin

A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex

(2020) Jouni Kvist et al.   BMC GENOMICS

DNA Methylation in Anopheles albimanus Modulates the Midgut Immune Response Against Plasmodium berghei

(2020) Fabiola Claudio-Piedras et al.   Frontiers in Immunology

Comparative Analysis of CpG Sites and Islands Distributed in Mitochondrial DNA of Model Organisms

(2020) Krzysztof Kowal et al.   Animals

Daphnia magna modifies its gene expression extensively in response to caloric restriction revealing a novel effect on haemoglobin isoform preference

(2020) Jack Hearn et al.   MOLECULAR ECOLOGY

­­­­­­Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods

(2020) Samuel H. Lewis et al.   PLoS Genetics

Dnmt1 is essential for egg production and embryo viability in the large milkweed bug, Oncopeltus fasciatus

(2019) Adam J. Bewick et al.   Epigenetics & Chromatin

Genome-wide methylation is modified by caloric restriction in Daphnia magna

(2019) Jack Hearn et al.   BMC GENOMICS

The genome of the freshwater water flea Daphnia magna: A potential use for freshwater molecular ecotoxicology

(2019) Bo-Young Lee et al.   AQUATIC TOXICOLOGY

Epigenetic Aging Clocks in Ecology and Evolution

(2019) Benjamin B. Parrott et al.   TRENDS IN ECOLOGY & EVOLUTION

Sex‐specific changes in the aphid DNA methylation landscape

(2019) Thomas C. Mathers et al.   MOLECULAR ECOLOGY

Subgenomic flavivirus RNA binds the mosquito DEAD/H-box helicase ME31B and determines Zika virus transmission by Aedes aegypti

(2019) Giel P. Göertz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Model of the Conserved Epigenetic Regulation of Sex

(2019) Francesc Piferrer et al.   Frontiers in Genetics

Temperature and clone-dependent effects of microplastics on immunity and life history in Daphnia magna

(2019) Daniel E. Sadler et al.   ENVIRONMENTAL POLLUTION

Transgenerational DNA Methylation Changes in Daphnia magna Exposed to Chronic γ Irradiation

(2018) Marie Trijau et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

DNA methylation affects the lifespan of honey bee ( Apis mellifera L.) workers – Evidence for a regulatory module that involves vitellogenin expression but is independent of juvenile hormone function

(2018) Carlos A.M. Cardoso-Júnior et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Daphnia magna microRNAs respond to nutritional stress and ageing but are not transgenerational

(2018) Jack Hearn et al.   MOLECULAR ECOLOGY

Application of a novel molecular method to age free-living wild Bechstein's bats

(2018) Patrick G.R. Wright et al.   Molecular Ecology Resources

Transgenerational Inheritance of DNA Hypomethylation in Daphnia magna in Response to Salinity Stress

(2018) Guilherme Jeremias et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Pattern of DNA Methylation in Daphnia: Evolutionary Perspective

(2018) Jouni Kvist et al.   Genome Biology and Evolution

Epigenetics in Insects: Genome Regulation and the Generation of Phenotypic Diversity

(2018) Karl M. Glastad et al.   Annual Review of Entomology

Variation in DNA Methylation Is Not Consistently Reflected by Sociality in Hymenoptera

(2017) Karl M. Glastad et al.   Genome Biology and Evolution

Bigger is better: changes in body size explain a maternal effect of food on offspring disease resistance

(2017) Jennie S. Garbutt et al.   Ecology and Evolution

ME31B globally represses maternal mRNAs by two distinct mechanisms during the Drosophila maternal-to-zygotic transition

(2017) Miranda Wang et al.   eLife

Age-dependent expression ofDNMT1andDNMT3Bin PBMCs from a large European population enrolled in the MARK-AGE study

(2016) Fabio Ciccarone et al.   AGING CELL

Differential methylation analysis for BS-seq data under general experimental design

(2016) Yongseok Park et al.   BIOINFORMATICS

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Status of hepatic DNA methylome predetermines and modulates the severity of non-alcoholic fatty liver injury in mice

(2016) Volodymyr P. Tryndyak et al.   BMC GENOMICS

Bisulfite Sequencing with Daphnia Highlights a Role for Epigenetics in Regulating Stress Response to Microcystis through Preferential Differential Methylation of Serine and Threonine Amino Acids

(2016) Jana Asselman et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Gene Body Methylation Patterns inDaphniaAre Associated with Gene Family Size

(2016) Jana Asselman et al.   Genome Biology and Evolution

ChIP-Seq-Annotated Heliconius erato Genome Highlights Patterns of cis -Regulatory Evolution in Lepidoptera

(2016) James J. Lewis et al.   Cell Reports

The caste- and sex-specific DNA methylome of the termite Zootermopsis nevadensis

(2016) Karl M. Glastad et al.   Scientific Reports

Global cytosine methylation inDaphnia magnadepends on genotype, environment, and their interaction

(2015) Jana Asselman et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Epigenetic (re)programming of caste-specific behavior in the ant Camponotus floridanus

(2015) D. F. Simola et al.   SCIENCE

Genetic and epigenetic variation among inbred mouse littermates: identification of inter-individual differentially methylated regions

(2015) Harald Oey et al.   Epigenetics & Chromatin

Ageing and Caloric Restriction in a Marine Planktonic Copepod

(2015) Enric Saiz et al.   Scientific Reports

Erratum to: DNA methylation age of human tissues and cell types

(2015) Steve Horvath   GENOME BIOLOGY

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

Predators and Patterns of Within-Host Growth Can Mediate Both Among-Host Competition and Evolution of Transmission Potential of Parasites

(2014) Stuart K. J. R. Auld et al.   AMERICAN NATURALIST

Maternal food quantity affects offspring feeding rate in Daphnia magna

(2014) J. S. Garbutt et al.   Biology Letters

Epigenetic estimation of age in humpback whales

(2014) Andrea M. Polanowski et al.   Molecular Ecology Resources

Intergenerational genomic DNA methylation patterns in mouse hybrid strains

(2014) Luz D Orozco et al.   GENOME BIOLOGY

Genome-wide profiling of DNA methylation and gene expression in Crassostrea gigas male gametes

(2014) Claire E. Olson et al.   Frontiers in Physiology

Insect small non-coding RNA involved in epigenetic regulations

(2014) Séverine Chambeyron et al.   Current Opinion in Insect Science

The Function of Intragenic DNA Methylation: Insights from Insect Epigenomes

(2013) B. G. Hunt et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

mTOR is a key modulator of ageing and age-related disease

(2013) Simon C. Johnson et al.   NATURE

Bridging the transgenerational gap with epigenetic memory

(2013) Jana P. Lim et al.   TRENDS IN GENETICS

DNA methylation age of human tissues and cell types

(2013) Steve Horvath   GENOME BIOLOGY

Base-Resolution Analyses of Sequence and Parent-of-Origin Dependent DNA Methylation in the Mouse Genome

(2012) Wei Xie et al.   CELL

Reversible switching between epigenetic states in honeybee behavioral subcastes

(2012) Brian R Herb et al.   NATURE NEUROSCIENCE

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

(2012) Kasper D Hansen et al.   GENOME BIOLOGY

Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data

(2012) Yaping Liu et al.   GENOME BIOLOGY

Strong differences in the clonal variation of two Daphnia species from mountain lakes affected by overwintering strategy

(2011) Eva Hamrová et al.   BMC EVOLUTIONARY BIOLOGY

Genetic variation for maternal effects on parasite susceptibility

(2011) M. STJERNMAN et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

DNA methylation analysis of multiple tissues from newborn twins reveals both genetic and intrauterine components to variation in the human neonatal epigenome

(2010) Miina Ollikainen et al.   HUMAN MOLECULAR GENETICS

Single base–resolution methylome of the silkworm reveals a sparse epigenomic map

(2010) Hui Xiang et al.   NATURE BIOTECHNOLOGY

Epigenetic regulation of the honey bee transcriptome: unravelling the nature of methylated genes

(2009) Sylvain Foret et al.   BMC GENOMICS