Sex‐specific changes in the aphid DNA methylation landscape

Does sexual dimorphism in plants promote sex chromosome evolution?

(2018) Deborah Charlesworth   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Disentangling the Causes for Faster-X Evolution in Aphids

(2018) Julie Jaquiéry et al.   Genome Biology and Evolution

Tra-2Mediates Cross-Talk Between Sex Determination and Wing Polyphenism in FemaleNilaparvata lugens

(2017) Ji-Chong Zhuo et al.   GENETICS

Rapid evolution of female-biased genes among four species of Anopheles malaria mosquitoes

(2017) Francesco Papa et al.   GENOME RESEARCH

Dosage compensation and sex-specific epigenetic landscape of the X chromosome in the pea aphid

(2017) Gautier Richard et al.   Epigenetics & Chromatin

Tra-2Mediates Cross-Talk Between Sex Determination and Wing Polyphenism in FemaleNilaparvata lugens

(2017) Ji-Chong Zhuo et al.   GENETICS

Sex-Biased Gene Expression

(2016) Sonja Grath et al.   Annual Review of Genetics

Robust DNA Methylation in the Clonal Raider Ant Brain

(2016) Romain Libbrecht et al.   CURRENT BIOLOGY

Sex Determination, Sex Chromosomes, and Karyotype Evolution in Insects

(2016) Heath Blackmon et al.   JOURNAL OF HEREDITY

The molecular hallmarks of epigenetic control

(2016) C. David Allis et al.   NATURE REVIEWS GENETICS

The caste- and sex-specific DNA methylome of the termite Zootermopsis nevadensis

(2016) Karl M. Glastad et al.   Scientific Reports

The genome of Diuraphis noxia, a global aphid pest of small grains

(2015) Scott J Nicholson et al.   BMC GENOMICS

Two insulin receptors determine alternative wing morphs in planthoppers

(2015) Hai-Jun Xu et al.   NATURE

Function and information content of DNA methylation

(2015) Dirk Schübeler   NATURE

RNA-mediated epigenetic regulation of gene expression

(2015) Daniel Holoch et al.   NATURE REVIEWS GENETICS

Genetic and epigenetic architecture of sex-biased expression in the jewel waspsNasonia vitripennisandgiraulti

(2015) Xu Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies

(2015) Solenn Patalano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures

(2014) D. H. Phanstiel et al.   BIOINFORMATICS

Sex-Biased Gene Expression and Evolution of the X Chromosome in Nematodes

(2014) S. E. Albritton et al.   GENETICS

Accelerated Evolution of Morph-Biased Genes in Pea Aphids

(2014) Swapna R. Purandare et al.   MOLECULAR BIOLOGY AND EVOLUTION

The DNA methylation landscape of human early embryos

(2014) Hongshan Guo et al.   NATURE

Eusocial insects as emerging models for behavioural epigenetics

(2014) Hua Yan et al.   NATURE REVIEWS GENETICS

Notes on the role of dynamic DNA methylation in mammalian development

(2014) Timothy H. Bestor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

Genome-Wide Analysis of DNA Methylation Dynamics during Early Human Development

(2014) Hiroaki Okae et al.   PLoS Genetics

SUMOylation is essential for sex-specific assembly and function of the Caenorhabditis elegans dosage compensation complex on X chromosomes

(2013) R. R. Pferdehirt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Two sexes, one genome: the evolutionary dynamics of intralocus sexual conflict

(2013) Tanya M. Pennell et al.   Ecology and Evolution

Masculinization of the X Chromosome in the Pea Aphid

(2013) Julie Jaquiéry et al.   PLoS Genetics

Function and Evolution of DNA Methylation in Nasonia vitripennis

(2013) Xu Wang et al.   PLoS Genetics

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Simplification and Desexualization of Gene Expression in Self-Fertile Nematodes

(2012) Cristel G. Thomas et al.   CURRENT BIOLOGY

Genome-wide and Caste-Specific DNA Methylomes of the Ants Camponotus floridanus and Harpegnathos saltator

(2012) Roberto Bonasio et al.   CURRENT BIOLOGY

Reversible switching between epigenetic states in honeybee behavioral subcastes

(2012) Brian R Herb et al.   NATURE NEUROSCIENCE

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

(2012) Altuna Akalin et al.   GENOME BIOLOGY

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Evolution of Sex Chromosomes in Insects

(2010) Vera B. Kaiser et al.   Annual Review of Genetics

SLIM: a sliding linear model for estimating the proportion of true null hypotheses in datasets with dependence structures

(2010) Hong-Qiang Wang et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Evolution of Eukaryotic DNA Methylation and the Pursuit of Safer Sex

(2010) Assaf Zemach et al.   CURRENT BIOLOGY

Functional Conservation of DNA Methylation in the Pea Aphid and the Honeybee

(2010) Brendan G. Hunt et al.   Genome Biology and Evolution

A functional DNA methylation system in the pea aphid, Acyrthosiphon pisum

(2010) T. K. Walsh et al.   INSECT MOLECULAR BIOLOGY

Single base–resolution methylome of the silkworm reveals a sparse epigenomic map

(2010) Hui Xiang et al.   NATURE BIOTECHNOLOGY

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Conservation and divergence of methylation patterning in plants and animals

(2010) S. Feng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Sex Chromosomes and the Evolution of Sexual Dimorphism: Lessons from the Genome

(2008) Judith E. Mank   AMERICAN NATURALIST

DNA methylation landscapes: provocative insights from epigenomics

(2008) Miho M. Suzuki et al.   NATURE REVIEWS GENETICS

Human-macaque comparisons illuminate variation in neutral substitution rates

(2008) Svitlana Tyekucheva et al.   GENOME BIOLOGY