Dnmt1 is essential for egg production and embryo viability in the large milkweed bug, Oncopeltus fasciatus

Signatures of DNA Methylation across Insects Suggest Reduced DNA Methylation Levels in Holometabola

(2018) Panagiotis Provataris et al.   Genome Biology and Evolution

Functions and mechanisms of epigenetic inheritance in animals

(2018) Ksenia Skvortsova et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Dnmt1 has an essential function despite the absence of CpG DNA methylation in the red flour beetle Tribolium castaneum

(2018) Nora K. E. Schulz et al.   Scientific Reports

Oncopeltus fasciatus as an evo-devo research organism

(2017) Ariel D. Chipman   GENESIS

Variation in DNA Methylation Is Not Consistently Reflected by Sociality in Hymenoptera

(2017) Karl M. Glastad et al.   Genome Biology and Evolution

Developmental DNA methyltransferase expression in the fire ant Solenopsis invicta

(2017) Sasha Kay et al.   Insect Science

Making a queen: an epigenetic analysis of the robustness of the honeybee (Apis mellifera ) queen developmental pathway

(2017) Xu Jiang He et al.   MOLECULAR ECOLOGY

Robust DNA Methylation in the Clonal Raider Ant Brain

(2016) Romain Libbrecht et al.   CURRENT BIOLOGY

Gene Body Methylation Patterns inDaphniaAre Associated with Gene Family Size

(2016) Jana Asselman et al.   Genome Biology and Evolution

The Genome and Methylome of a Subsocial Small Carpenter Bee,Ceratina calcarata

(2016) Sandra M. Rehan et al.   Genome Biology and Evolution

On the origin and evolutionary consequences of gene body DNA methylation

(2016) Adam J. Bewick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linking Genes and Brain Development of Honeybee Workers: A Whole-Transcriptome Approach

(2016) Christina Vleurinck et al.   PLoS One

The caste- and sex-specific DNA methylome of the termite Zootermopsis nevadensis

(2016) Karl M. Glastad et al.   Scientific Reports

The Genome and Methylome of a Beetle with Complex Social Behavior,Nicrophorus vespilloides(Coleoptera: Silphidae)

(2015) Christopher B. Cunningham et al.   Genome Biology and Evolution

DNA methylation changes induced by long and short photoperiods in Nasonia

(2015) Mirko Pegoraro et al.   GENOME RESEARCH

Alternative migratory locust phenotypes are associated with differences in the expression of genes encoding the methylation machinery

(2015) K. L. Robinson et al.   INSECT MOLECULAR BIOLOGY

PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences

(2015) Siavash Mirarab et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Human body epigenome maps reveal noncanonical DNA methylation variation

(2015) Matthew D. Schultz et al.   NATURE

MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing

(2015) Mark A Urich et al.   Nature Protocols

Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies

(2015) Solenn Patalano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FAST m C : A Suite of Predictive Models for Nonreference-Based Estimations of DNA Methylation

(2015) Adam J. Bewick et al.   G3-Genes Genomes Genetics

Ferritin Is Required in Multiple Tissues during Drosophila melanogaster Development

(2015) Nicanor González-Morales et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Recurrent loss of CenH3 is associated with independent transitions to holocentricity in insects

(2014) Ines A Drinnenberg et al.   eLife

Patterning and Regulatory Associations of DNA Methylation Are Mirrored by Histone Modifications in Insects

(2013) Brendan G. Hunt et al.   Genome Biology and Evolution

RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee

(2013) H. Li-Byarlay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Function and Evolution of DNA Methylation in Nasonia vitripennis

(2013) Xu Wang et al.   PLoS Genetics

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Evidence against a germ plasm in the milkweed bug Oncopeltus fasciatus, a hemimetabolous insect

(2013) B. Ewen-Campen et al.   Biology Open

Genome-wide and Caste-Specific DNA Methylomes of the Ants Camponotus floridanus and Harpegnathos saltator

(2012) Roberto Bonasio et al.   CURRENT BIOLOGY

Honeybees and cell lines as models of DNA methylation and aging in response to diet

(2012) Dianne Ford   EXPERIMENTAL GERONTOLOGY

Characterization of genome methylation patterns in the desert locust Schistocerca gregaria

(2012) C. Falckenhayn et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The Evolution of Invertebrate Gene Body Methylation

(2012) S. Sarda et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Reversible switching between epigenetic states in honeybee behavioral subcastes

(2012) Brian R Herb et al.   NATURE NEUROSCIENCE

DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees

(2012) S. Foret et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

‘Leveling’ the playing field for analyses of single-base resolution DNA methylomes

(2012) Matthew D. Schultz et al.   TRENDS IN GENETICS

DNA methylation changes elicited by social stimuli in the brains of worker honey bees

(2011) G. A. Lockett et al.   GENES BRAIN AND BEHAVIOR

DNA methylation plays a crucial role during early Nasonia development

(2011) M. V. Zwier et al.   INSECT MOLECULAR BIOLOGY

Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly

(2011) S. Takuno et al.   MOLECULAR BIOLOGY AND EVOLUTION

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Single base–resolution methylome of the silkworm reveals a sparse epigenomic map

(2010) Hui Xiang et al.   NATURE BIOTECHNOLOGY

Epigenetic Reprogramming in Plant and Animal Development

(2010) Suhua Feng et al.   SCIENCE

The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers

(2010) Frank Lyko et al.   PLOS BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

(2008) Ryan Lister et al.   CELL

xDnmt1 regulates transcriptional silencing in pre-MBT Xenopus embryos independently of its catalytic function

(2008) D. S. Dunican et al.   DEVELOPMENT

Maternal and zygotic Dnmt1 are necessary and sufficient for the maintenance of DNA methylation imprints during preimplantation development

(2008) R. Hirasawa et al.   GENES & DEVELOPMENT

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

(2008) Shawn J. Cokus et al.   NATURE

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH