Analysis of a photosynthetic cyanobacterium rich in internal membrane systems via gradient profiling by sequencing (Grad-seq)
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Title
Analysis of a photosynthetic cyanobacterium rich in internal membrane systems via gradient profiling by sequencing (Grad-seq)
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Keywords
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Journal
PLANT CELL
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2021-01-01
DOI
10.1093/plcell/koaa017
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Note: Only part of the references are listed.- The default cyanobacterial linked genome: an interactive platform based on cyanobacterial linkage networks to assist functional genomics
- (2020) Jose I. Labella et al. FEBS LETTERS
- RNA helicase–regulated processing of the Synechocystis rimO–crhR operon results in differential cistron expression and accumulation of two sRNAs
- (2020) Albert Remus R. Rosana et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Activation and self-inactivation mechanisms of the cyclic oligoadenylate-dependent CRISPR ribonuclease Csm6
- (2020) Carmela Garcia-Doval et al. Nature Communications
- Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein
- (2020) Milan Gerovac et al. RNA
- Tetramerisation of the CRISPR ring nuclease Crn3/Csx3 facilitates cyclic oligoadenylate cleavage
- (2020) Januka S Athukoralage et al. eLife
- RNA-Binding Proteins Driving the Regulatory Activity of Small Non-coding RNAs in Bacteria
- (2020) Ana P. Quendera et al. Frontiers in Molecular Biosciences
- Distinctive Features of PipX, a Unique Signaling Protein of Cyanobacteria
- (2020) Jose I. Labella et al. Life-Basel
- Solution Structure of the Detergent–Photosystem II Core Complex Investigated by Small-Angle Scattering Techniques
- (2020) Maksym Golub et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli
- (2020) Jens Hör et al. NUCLEIC ACIDS RESEARCH
- The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium
- (2019) Alexander J. Westermann et al. mBio
- Phycobilisomes Harbor FNRL in Cyanobacteria
- (2019) Haijun Liu et al. mBio
- Divergent methylation of CRISPR repeats and cas genes in a subtype I-D CRISPR-Cas-system
- (2019) Ingeborg Scholz et al. BMC MICROBIOLOGY
- Toward understanding the origin and evolution of cellular organisms
- (2019) Minoru Kanehisa PROTEIN SCIENCE
- Genetic and metabolic advances in the engineering of cyanobacteria
- (2019) Dhanya Vijay et al. CURRENT OPINION IN BIOTECHNOLOGY
- RNA-RNA Interactomes of ProQ and Hfq Reveal Overlapping and Competing Roles
- (2019) Sahar Melamed et al. MOLECULAR CELL
- Proteome Mapping of a Cyanobacterium Reveals Distinct Compartment Organization and Cell-Dispersed Metabolism
- (2019) Laura L. Baers et al. PLANT PHYSIOLOGY
- A novel chlorophyll protein complex in the repair cycle of photosystem II
- (2019) Daniel A. Weisz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structure of Csx1-cOA4 complex reveals the basis of RNA decay in Type III-B CRISPR-Cas
- (2019) Rafael Molina et al. Nature Communications
- Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants
- (2019) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- Systems and synthetic biology for the biotechnological application of cyanobacteria
- (2018) Martin Hagemann et al. CURRENT OPINION IN BIOTECHNOLOGY
- Bacterial RNA Biology on a Genome Scale
- (2018) Jens Hör et al. MOLECULAR CELL
- RNA-binding proteins in bacteria
- (2018) Erik Holmqvist et al. NATURE REVIEWS MICROBIOLOGY
- Systematic prediction of genes functionally linked to CRISPR-Cas systems by gene neighborhood analysis
- (2018) Sergey A. Shmakov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families
- (2018) Shiraz A. Shah et al. RNA Biology
- Cas4 Facilitates PAM-Compatible Spacer Selection during CRISPR Adaptation
- (2018) Sebastian N. Kieper et al. Cell Reports
- The host-encoded RNase E endonuclease as the crRNA maturation enzyme in a CRISPR–Cas subtype III-Bv system
- (2018) Juliane Behler et al. Nature Microbiology
- The nitrogen regulator PipX acts in cis to prevent operon polarity
- (2018) Raquel Cantos et al. Environmental Microbiology Reports
- New approach for understanding genome variations in KEGG
- (2018) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons
- (2018) Ikuo Uchiyama et al. NUCLEIC ACIDS RESEARCH
- The Ssl2245-Sll1130 Toxin-Antitoxin System Mediates Heat-induced Programmed Cell Death inSynechocystissp. PCC6803
- (2017) Afshan Srikumar et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Absence of the KhpA and KhpB (JAG/EloR) RNA-binding proteins suppresses the requirement for PBP2b by overproduction of FtsA in Streptococcus pneumoniae D39
- (2017) Jiaqi J. Zheng et al. MOLECULAR MICROBIOLOGY
- Type III CRISPR–Cas systems produce cyclic oligoadenylate second messengers
- (2017) Ole Niewoehner et al. NATURE
- A cyclic oligonucleotide signaling pathway in type III CRISPR-Cas systems
- (2017) Migle Kazlauskiene et al. SCIENCE
- Small proteins in cyanobacteria provide a paradigm for the functional analysis of the bacterial micro-proteome
- (2016) Desiree Baumgartner et al. BMC MICROBIOLOGY
- Structural constraints and enzymatic promiscuity in the Cas6-dependent generation of crRNAs
- (2016) Viktoria Reimann et al. NUCLEIC ACIDS RESEARCH
- The Non-Coding RNA Ncr0700/PmgR1 is Required for Photomixotrophic Growth and the Regulation of Glycogen Accumulation in the CyanobacteriumSynechocystissp. PCC 6803
- (2016) Alice J. de Porcellinis et al. PLANT AND CELL PHYSIOLOGY
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- (2016) Fudan Gao et al. PLANT PHYSIOLOGY
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- (2016) Alexandre Smirnov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Type II Toxin–Antitoxin Systems in the Unicellular Cyanobacterium Synechocystis sp. PCC 6803
- (2016) Stefan Kopfmann et al. Toxins
- Expanding the Cyanobacterial Nitrogen Regulatory Network: The GntR-Like Regulator PlmA Interacts with the PII-PipX Complex
- (2016) Jose I. Labella et al. Frontiers in Microbiology
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- (2016) Anna Rast et al. Frontiers in Plant Science
- The sRNA NsiR4 is involved in nitrogen assimilation control in cyanobacteria by targeting glutamine synthetase inactivating factor IF7
- (2015) Stephan Klähn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2015) Philipp Spät et al. Frontiers in Microbiology
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- (2014) Thomas R. Cech et al. CELL
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- (2014) Matthias Kopf et al. DNA RESEARCH
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- (2014) Jingsong Zhang et al. JOURNAL OF BIOLOGICAL CHEMISTRY
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- (2014) Nils Schuergers et al. MOLECULAR MICROBIOLOGY
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- (2014) Kevin V. Morris et al. NATURE REVIEWS GENETICS
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- (2014) J. Georg et al. PLANT CELL
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- (2014) Ajla Hrle et al. RNA Biology
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- (2014) J.-Y. Zhang et al. RNA
- CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems
- (2014) Kira S. Makarova et al. Frontiers in Genetics
- Photosystem II Assembly: From Cyanobacteria to Plants
- (2013) Jörg Nickelsen et al. Annual Review of Plant Biology
- Toxin-antitoxin systems are ubiquitous and versatile modulators of prokaryotic cell fate
- (2013) Christopher F. Schuster et al. FEMS MICROBIOLOGY LETTERS
- RemA is a DNA-binding protein that activates biofilm matrix gene expression inBacillus subtilis
- (2013) Jared T. Winkelman et al. MOLECULAR MICROBIOLOGY
- The Gene sml0013 of Synechocystis Species Strain PCC 6803 Encodes for a Novel Subunit of the NAD(P)H Oxidoreductase or Complex I That Is Ubiquitously Distributed among Cyanobacteria
- (2013) D. Schwarz et al. PLANT PHYSIOLOGY
- CRISPR-Cas Systems in the Cyanobacterium Synechocystis sp. PCC6803 Exhibit Distinct Processing Pathways Involving at Least Two Cas6 and a Cmr2 Protein
- (2013) Ingeborg Scholz et al. PLoS One
- Microevolution in Cyanobacteria: Re-sequencing a Motile Substrain of Synechocystis sp. PCC 6803
- (2012) D. Trautmann et al. DNA RESEARCH
- The Proteomics Identifications (PRIDE) database and associated tools: status in 2013
- (2012) Juan Antonio Vizcaíno et al. NUCLEIC ACIDS RESEARCH
- Characterization of PSII-LHCII supercomplexes isolated from pea thylakoid membrane by one-step treatment with - and -dodecyl-D-maltoside
- (2012) S. Barera et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Characterization of a Synechocystis double mutant lacking the photosystem II assembly factors YCF48 and Sll0933
- (2012) Birgit Rengstl et al. PLANTA
- Comparative analysis of carboxysome shell proteins
- (2011) James N. Kinney et al. PHOTOSYNTHESIS RESEARCH
- An experimentally anchored map of transcriptional start sites in the model cyanobacteriumSynechocystissp. PCC6803
- (2011) Jan Mitschke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SVM based prediction of RNA-binding proteins using binding residues and evolutionary information
- (2010) Manish Kumar et al. JOURNAL OF MOLECULAR RECOGNITION
- Dynamic evolution of translation initiation mechanisms in prokaryotes
- (2010) S. Nakagawa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structural basis for the regulation of NtcA-dependent transcription by proteins PipX and PII
- (2010) J. L. Llacer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Analysis of current and alternative phenol based RNA extraction methodologies for cyanobacteria
- (2009) Fernando Pinto et al. BMC MOLECULAR BIOLOGY
- RNA-Guided RNA Cleavage by a CRISPR RNA-Cas Protein Complex
- (2009) Caryn R. Hale et al. CELL
- Cyanobacteria contain a structural homologue of the Hfq protein with altered RNA-binding properties
- (2009) Andreas Bøggild et al. FEBS Journal
- Characterization of the FtsZ-Interacting Septal Proteins SepF and Ftn6 in the Spherical-Celled Cyanobacterium Synechocystis Strain PCC 6803
- (2009) M. Marbouty et al. JOURNAL OF BACTERIOLOGY
- RemA (YlzA) and RemB (YaaB) Regulate Extracellular Matrix Operon Expression and Biofilm Formation in Bacillus subtilis
- (2009) J. T. Winkelman et al. JOURNAL OF BACTERIOLOGY
- Distinct roles of CpcG1-phycobilisome and CpcG2-phycobilisome in state transitions in a cyanobacterium Synechocystis sp. PCC 6803
- (2009) Kumiko Kondo et al. PHOTOSYNTHESIS RESEARCH
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- sll1961 is a novel regulator of phycobilisome degradation during nitrogen starvation in the cyanobacteriumSynechocystissp. PCC 6803
- (2008) Hanayo Sato et al. FEBS LETTERS
- The cyanobacterial homologue of the RNA chaperone Hfq is essential for motility of Synechocystis sp. PCC 6803
- (2008) Dennis Dienst et al. MICROBIOLOGY-SGM
- The Chloroplast Genomes of the Green Algae Pyramimonas, Monomastix, and Pycnococcus Shed New light on the Evolutionary History of Prasinophytes and the Origin of the Secondary Chloroplasts of Euglenids
- (2008) Monique Turmel et al. MOLECULAR BIOLOGY AND EVOLUTION
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
- Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes
- (2008) S. J. J. Brouns et al. SCIENCE
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