Analysis of a photosynthetic cyanobacterium rich in internal membrane systems via gradient profiling by sequencing (Grad-seq)

The default cyanobacterial linked genome: an interactive platform based on cyanobacterial linkage networks to assist functional genomics

(2020) Jose I. Labella et al.   FEBS LETTERS

RNA helicase–regulated processing of the Synechocystis rimO–crhR operon results in differential cistron expression and accumulation of two sRNAs

(2020) Albert Remus R. Rosana et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Activation and self-inactivation mechanisms of the cyclic oligoadenylate-dependent CRISPR ribonuclease Csm6

(2020) Carmela Garcia-Doval et al.   Nature Communications

Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein

(2020) Milan Gerovac et al.   RNA

Tetramerisation of the CRISPR ring nuclease Crn3/Csx3 facilitates cyclic oligoadenylate cleavage

(2020) Januka S Athukoralage et al.   eLife

RNA-Binding Proteins Driving the Regulatory Activity of Small Non-coding RNAs in Bacteria

(2020) Ana P. Quendera et al.   Frontiers in Molecular Biosciences

Distinctive Features of PipX, a Unique Signaling Protein of Cyanobacteria

(2020) Jose I. Labella et al.   Life-Basel

Solution Structure of the Detergent–Photosystem II Core Complex Investigated by Small-Angle Scattering Techniques

(2020) Maksym Golub et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli

(2020) Jens Hör et al.   NUCLEIC ACIDS RESEARCH

The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium

(2019) Alexander J. Westermann et al.   mBio

Phycobilisomes Harbor FNRL in Cyanobacteria

(2019) Haijun Liu et al.   mBio

Divergent methylation of CRISPR repeats and cas genes in a subtype I-D CRISPR-Cas-system

(2019) Ingeborg Scholz et al.   BMC MICROBIOLOGY

Toward understanding the origin and evolution of cellular organisms

(2019) Minoru Kanehisa   PROTEIN SCIENCE

Genetic and metabolic advances in the engineering of cyanobacteria

(2019) Dhanya Vijay et al.   CURRENT OPINION IN BIOTECHNOLOGY

RNA-RNA Interactomes of ProQ and Hfq Reveal Overlapping and Competing Roles

(2019) Sahar Melamed et al.   MOLECULAR CELL

Proteome Mapping of a Cyanobacterium Reveals Distinct Compartment Organization and Cell-Dispersed Metabolism

(2019) Laura L. Baers et al.   PLANT PHYSIOLOGY

A novel chlorophyll protein complex in the repair cycle of photosystem II

(2019) Daniel A. Weisz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure of Csx1-cOA4 complex reveals the basis of RNA decay in Type III-B CRISPR-Cas

(2019) Rafael Molina et al.   Nature Communications

Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants

(2019) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Systems and synthetic biology for the biotechnological application of cyanobacteria

(2018) Martin Hagemann et al.   CURRENT OPINION IN BIOTECHNOLOGY

Bacterial RNA Biology on a Genome Scale

(2018) Jens Hör et al.   MOLECULAR CELL

RNA-binding proteins in bacteria

(2018) Erik Holmqvist et al.   NATURE REVIEWS MICROBIOLOGY

Systematic prediction of genes functionally linked to CRISPR-Cas systems by gene neighborhood analysis

(2018) Sergey A. Shmakov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families

(2018) Shiraz A. Shah et al.   RNA Biology

Cas4 Facilitates PAM-Compatible Spacer Selection during CRISPR Adaptation

(2018) Sebastian N. Kieper et al.   Cell Reports

The host-encoded RNase E endonuclease as the crRNA maturation enzyme in a CRISPR–Cas subtype III-Bv system

(2018) Juliane Behler et al.   Nature Microbiology

The nitrogen regulator PipX acts in cis to prevent operon polarity

(2018) Raquel Cantos et al.   Environmental Microbiology Reports

New approach for understanding genome variations in KEGG

(2018) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons

(2018) Ikuo Uchiyama et al.   NUCLEIC ACIDS RESEARCH

The Ssl2245-Sll1130 Toxin-Antitoxin System Mediates Heat-induced Programmed Cell Death inSynechocystissp. PCC6803

(2017) Afshan Srikumar et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Absence of the KhpA and KhpB (JAG/EloR) RNA-binding proteins suppresses the requirement for PBP2b by overproduction of FtsA in Streptococcus pneumoniae D39

(2017) Jiaqi J. Zheng et al.   MOLECULAR MICROBIOLOGY

Type III CRISPR–Cas systems produce cyclic oligoadenylate second messengers

(2017) Ole Niewoehner et al.   NATURE

A cyclic oligonucleotide signaling pathway in type III CRISPR-Cas systems

(2017) Migle Kazlauskiene et al.   SCIENCE

Small proteins in cyanobacteria provide a paradigm for the functional analysis of the bacterial micro-proteome

(2016) Desiree Baumgartner et al.   BMC MICROBIOLOGY

Structural constraints and enzymatic promiscuity in the Cas6-dependent generation of crRNAs

(2016) Viktoria Reimann et al.   NUCLEIC ACIDS RESEARCH

The Non-Coding RNA Ncr0700/PmgR1 is Required for Photomixotrophic Growth and the Regulation of Glycogen Accumulation in the CyanobacteriumSynechocystissp. PCC 6803

(2016) Alice J. de Porcellinis et al.   PLANT AND CELL PHYSIOLOGY

The NDH-1L-PSI Supercomplex Is Important for Efficient Cyclic Electron Transport in Cyanobacteria

(2016) Fudan Gao et al.   PLANT PHYSIOLOGY

Grad-seq guides the discovery of ProQ as a major small RNA-binding protein

(2016) Alexandre Smirnov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Type II Toxin–Antitoxin Systems in the Unicellular Cyanobacterium Synechocystis sp. PCC 6803

(2016) Stefan Kopfmann et al.   Toxins

Expanding the Cyanobacterial Nitrogen Regulatory Network: The GntR-Like Regulator PlmA Interacts with the PII-PipX Complex

(2016) Jose I. Labella et al.   Frontiers in Microbiology

The Role of Slr0151, a Tetratricopeptide Repeat Protein from Synechocystis sp. PCC 6803, during Photosystem II Assembly and Repair

(2016) Anna Rast et al.   Frontiers in Plant Science

The sRNA NsiR4 is involved in nitrogen assimilation control in cyanobacteria by targeting glutamine synthetase inactivating factor IF7

(2015) Stephan Klähn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phosphoproteome of the cyanobacterium Synechocystis sp. PCC 6803 and its dynamics during nitrogen starvation

(2015) Philipp Spät et al.   Frontiers in Microbiology

FastRFunctions for Robust Correlations and Hierarchical Clustering

(2015) Peter Langfelder et al.   Journal of Statistical Software

Lacking alignments? The next-generation sequencing mapper segemehl revisited

(2014) Christian Otto et al.   BIOINFORMATICS

The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones

(2014) Thomas R. Cech et al.   CELL

Comparative Analysis of the Primary Transcriptome of Synechocystis sp. PCC 6803

(2014) Matthias Kopf et al.   DNA RESEARCH

NdhP Is an Exclusive Subunit of Large Complex of NADPH Dehydrogenase Essential to Stabilize the Complex inSynechocystissp. Strain PCC 6803

(2014) Jingsong Zhang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Binding of the RNA chaperone Hfq to the type IV pilus base is crucial for its function inSynechocystissp. PCC 6803

(2014) Nils Schuergers et al.   MOLECULAR MICROBIOLOGY

The rise of regulatory RNA

(2014) Kevin V. Morris et al.   NATURE REVIEWS GENETICS

The omega subunit of the RNA polymerase core directs transcription efficiency in cyanobacteria

(2014) Liisa Gunnelius et al.   NUCLEIC ACIDS RESEARCH

The Small Regulatory RNA SyR1/PsrR1 Controls Photosynthetic Functions in Cyanobacteria

(2014) J. Georg et al.   PLANT CELL

Structural analyses of the CRISPR protein Csc2 reveal the RNA-binding interface of the type I-D Cas7 family

(2014) Ajla Hrle et al.   RNA Biology

RNase E forms a complex with polynucleotide phosphorylase in cyanobacteria via a cyanobacterial-specific nonapeptide in the noncatalytic region

(2014) J.-Y. Zhang et al.   RNA

CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems

(2014) Kira S. Makarova et al.   Frontiers in Genetics

Photosystem II Assembly: From Cyanobacteria to Plants

(2013) Jörg Nickelsen et al.   Annual Review of Plant Biology

Toxin-antitoxin systems are ubiquitous and versatile modulators of prokaryotic cell fate

(2013) Christopher F. Schuster et al.   FEMS MICROBIOLOGY LETTERS

RemA is a DNA-binding protein that activates biofilm matrix gene expression inBacillus subtilis

(2013) Jared T. Winkelman et al.   MOLECULAR MICROBIOLOGY

The Gene sml0013 of Synechocystis Species Strain PCC 6803 Encodes for a Novel Subunit of the NAD(P)H Oxidoreductase or Complex I That Is Ubiquitously Distributed among Cyanobacteria

(2013) D. Schwarz et al.   PLANT PHYSIOLOGY

CRISPR-Cas Systems in the Cyanobacterium Synechocystis sp. PCC6803 Exhibit Distinct Processing Pathways Involving at Least Two Cas6 and a Cmr2 Protein

(2013) Ingeborg Scholz et al.   PLoS One

Microevolution in Cyanobacteria: Re-sequencing a Motile Substrain of Synechocystis sp. PCC 6803

(2012) D. Trautmann et al.   DNA RESEARCH

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Characterization of PSII-LHCII supercomplexes isolated from pea thylakoid membrane by one-step treatment with  - and  -dodecyl-D-maltoside

(2012) S. Barera et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Characterization of a Synechocystis double mutant lacking the photosystem II assembly factors YCF48 and Sll0933

(2012) Birgit Rengstl et al.   PLANTA

Comparative analysis of carboxysome shell proteins

(2011) James N. Kinney et al.   PHOTOSYNTHESIS RESEARCH

An experimentally anchored map of transcriptional start sites in the model cyanobacteriumSynechocystissp. PCC6803

(2011) Jan Mitschke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SVM based prediction of RNA-binding proteins using binding residues and evolutionary information

(2010) Manish Kumar et al.   JOURNAL OF MOLECULAR RECOGNITION

Dynamic evolution of translation initiation mechanisms in prokaryotes

(2010) S. Nakagawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural basis for the regulation of NtcA-dependent transcription by proteins PipX and PII

(2010) J. L. Llacer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of current and alternative phenol based RNA extraction methodologies for cyanobacteria

(2009) Fernando Pinto et al.   BMC MOLECULAR BIOLOGY

RNA-Guided RNA Cleavage by a CRISPR RNA-Cas Protein Complex

(2009) Caryn R. Hale et al.   CELL

Cyanobacteria contain a structural homologue of the Hfq protein with altered RNA-binding properties

(2009) Andreas Bøggild et al.   FEBS Journal

Characterization of the FtsZ-Interacting Septal Proteins SepF and Ftn6 in the Spherical-Celled Cyanobacterium Synechocystis Strain PCC 6803

(2009) M. Marbouty et al.   JOURNAL OF BACTERIOLOGY

RemA (YlzA) and RemB (YaaB) Regulate Extracellular Matrix Operon Expression and Biofilm Formation in Bacillus subtilis

(2009) J. T. Winkelman et al.   JOURNAL OF BACTERIOLOGY

Distinct roles of CpcG1-phycobilisome and CpcG2-phycobilisome in state transitions in a cyanobacterium Synechocystis sp. PCC 6803

(2009) Kumiko Kondo et al.   PHOTOSYNTHESIS RESEARCH

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

sll1961 is a novel regulator of phycobilisome degradation during nitrogen starvation in the cyanobacteriumSynechocystissp. PCC 6803

(2008) Hanayo Sato et al.   FEBS LETTERS

The cyanobacterial homologue of the RNA chaperone Hfq is essential for motility of Synechocystis sp. PCC 6803

(2008) Dennis Dienst et al.   MICROBIOLOGY-SGM

The Chloroplast Genomes of the Green Algae Pyramimonas, Monomastix, and Pycnococcus Shed New light on the Evolutionary History of Prasinophytes and the Origin of the Secondary Chloroplasts of Euglenids

(2008) Monique Turmel et al.   MOLECULAR BIOLOGY AND EVOLUTION

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes

(2008) S. J. J. Brouns et al.   SCIENCE