Small proteins in cyanobacteria provide a paradigm for the functional analysis of the bacterial micro-proteome

Network analysis of transcriptomics expands regulatory landscapes inSynechococcussp. PCC 7002

(2016) Ryan S. McClure et al.   NUCLEIC ACIDS RESEARCH

Small secreted proteins enable biofilm development in the cyanobacterium Synechococcus elongatus

(2016) Rami Parnasa et al.   Scientific Reports

Transcriptomic and Proteomic Profiling of Anabaena sp. Strain 90 under Inorganic Phosphorus Stress

(2015) Jonna Teikari et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

First description of small proteins encoded by spRNAs in Methanosarcina mazei strain Gö1

(2015) Daniela Prasse et al.   BIOCHIMIE

A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance

(2015) Douglas M. Anderson et al.   CELL

Found in translation: functions and evolution of a recently discovered alternative proteome

(2015) Christian R Landry et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Expression profiling of the bloom-forming cyanobacterium Nodularia CCY9414 under light and oxidative stress conditions

(2015) Matthias Kopf et al.   ISME Journal

PilB localization correlates with the direction of twitching motility in the cyanobacterium Synechocystis sp. PCC 6803

(2015) Nils Schuergers et al.   MICROBIOLOGY-SGM

Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium

(2015) M. Lluch-Senar et al.   Molecular Systems Biology

Toward the complete proteome of Synechocystis sp. PCC 6803

(2015) Liyan Gao et al.   PHOTOSYNTHESIS RESEARCH

The Plant Peptidome: An Expanding Repertoire of Structural Features and Biological Functions

(2015) Patrizia Tavormina et al.   PLANT CELL

Variations in the non-coding transcriptome as a driver of inter-strain divergence and physiological adaptation in bacteria

(2015) Matthias Kopf et al.   Scientific Reports

Phosphoproteome of the cyanobacterium Synechocystis sp. PCC 6803 and its dynamics during nitrogen starvation

(2015) Philipp Spät et al.   Frontiers in Microbiology

Transcriptomic and proteomic dynamics in the metabolism of a diazotrophic cyanobacterium, Cyanothece sp. PCC 7822 during a diurnal light–dark cycle

(2015) David Welkie et al.   BMC GENOMICS

Comparative Genome Analysis of the Closely Related Synechocystis Strains PCC 6714 and PCC 6803

(2014) M. Kopf et al.   DNA RESEARCH

Comparative Analysis of the Primary Transcriptome of Synechocystis sp. PCC 6803

(2014) Matthias Kopf et al.   DNA RESEARCH

Genetic diversity of the unicellular nitrogen-fixing cyanobacteria UCYN-A and its prymnesiophyte host

(2014) Anne Thompson et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative genomics reveals surprising divergence of two closely related strains of uncultivated UCYN-A cyanobacteria

(2014) Deniz Bombar et al.   ISME Journal

Emerging evidence for functional peptides encoded by short open reading frames

(2014) Shea J. Andrews et al.   NATURE REVIEWS GENETICS

Discovery of a Chlorophyll Binding Protein Complex Involved in the Early Steps of Photosystem II Assembly inSynechocystis

(2014) Jana Knoppová et al.   PLANT CELL

The primary transcriptome of the marine diazotroph Trichodesmium erythraeum IMS101

(2014) Ulrike Pfreundt et al.   Scientific Reports

A perspective on mammalian upstream open reading frame function

(2013) Joanna Somers et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Binding of MgtR, a Salmonella Transmembrane Regulatory Peptide, to MgtC, a Mycobacterium tuberculosis Virulence Factor: A Structural Study

(2013) Frantz L. Jean-Francois et al.   JOURNAL OF MOLECULAR BIOLOGY

CRISPR-Cas Systems in the Cyanobacterium Synechocystis sp. PCC6803 Exhibit Distinct Processing Pathways Involving at Least Two Cas6 and a Cmr2 Protein

(2013) Ingeborg Scholz et al.   PLoS One

Adaptation and modification of three CRISPR loci in two closely related cyanobacteria

(2013) Stephanie Hein et al.   RNA Biology

Gene Expression Regulation by Upstream Open Reading Frames and Human Disease

(2013) Cristina Barbosa et al.   PLoS Genetics

Microevolution in Cyanobacteria: Re-sequencing a Motile Substrain of Synechocystis sp. PCC 6803

(2012) D. Trautmann et al.   DNA RESEARCH

Genomic determinants of sporulation inBacilliandClostridia: towards the minimal set of sporulation-specific genes

(2012) Michael Y. Galperin et al.   ENVIRONMENTAL MICROBIOLOGY

The Antisense RNA As1_flv4 in the CyanobacteriumSynechocystissp. PCC 6803 Prevents Premature Expression of theflv4-2Operon upon Shift in Inorganic Carbon Supply

(2012) Marion Eisenhut et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

SR1—a small RNA with two remarkably conserved functions

(2012) Matthias Gimpel et al.   NUCLEIC ACIDS RESEARCH

Positive Regulation of psbA Gene Expression by cis-Encoded Antisense RNAs in Synechocystis sp. PCC 6803

(2012) I. Sakurai et al.   PLANT PHYSIOLOGY

New type I toxin-antitoxin families from “wild” and laboratory strains ofE. coli

(2012) Elizabeth M. Fozo   RNA Biology

The MgtR regulatory peptide negatively controls expression of the MgtA Mg2+ transporter in Salmonella enterica serovar Typhimurium

(2011) Eunna Choi et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Dual-function RNA regulators in bacteria

(2011) Carin K. Vanderpool et al.   BIOCHIMIE

Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation

(2011) Britt L Flaherty et al.   BMC GENOMICS

An expanding universe of small proteins

(2011) Errett C Hobbs et al.   CURRENT OPINION IN MICROBIOLOGY

The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal

(2011) Elisabeth Sonnleitner et al.   MOLECULAR MICROBIOLOGY

Dynamics of transcriptional start site selection during nitrogen stress-induced cell differentiation in Anabaena sp. PCC7120

(2011) J. Mitschke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An experimentally anchored map of transcriptional start sites in the model cyanobacteriumSynechocystissp. PCC6803

(2011) Jan Mitschke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNAcode: Robust discrimination of coding and noncoding regions in comparative sequence data

(2011) S. Washietl et al.   RNA

Peptide Signaling in the Staphylococci

(2010) Matthew Thoendel et al.   CHEMICAL REVIEWS

Regulation of protein function by ‘microProteins’

(2010) Annica-Carolin Staudt et al.   EMBO REPORTS

Global Proteomics Reveal an Atypical Strategy for Carbon/Nitrogen Assimilation by a Cyanobacterium Under Diverse Environmental Perturbations

(2010) Kimberly M. Wegener et al.   MOLECULAR & CELLULAR PROTEOMICS

A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon

(2010) Matthias Gimpel et al.   MOLECULAR MICROBIOLOGY

Abundance of type I toxin–antitoxin systems in bacteria: searches for new candidates and discovery of novel families

(2010) Elizabeth M. Fozo et al.   NUCLEIC ACIDS RESEARCH

Biocomputational prediction of non-coding RNAs in model cyanobacteria

(2009) Björn Voß et al.   BMC GENOMICS

Analysis of current and alternative phenol based RNA extraction methodologies for cyanobacteria

(2009) Fernando Pinto et al.   BMC MOLECULAR BIOLOGY

Small Stress Response Proteins in Escherichia coli: Proteins Missed by Classical Proteomic Studies

(2009) M. R. Hemm et al.   JOURNAL OF BACTERIOLOGY

Structure-Function, Stability, and Chemical Modification of the Cyanobacterial Cytochromeb6fComplex fromNostocsp. PCC 7120

(2009) Danas Baniulis et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Hydrophobic peptides: novel regulators within bacterial membrane

(2009) Eric Alix et al.   MOLECULAR MICROBIOLOGY

Cyanobacterial photosystem II at 2.9-Å resolution and the role of quinones, lipids, channels and chloride

(2009) Albert Guskov et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Small Toxic Proteins and the Antisense RNAs That Repress Them

(2008) E. M. Fozo et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Small membrane proteins found by comparative genomics and ribosome binding site models

(2008) Matthew R. Hemm et al.   MOLECULAR MICROBIOLOGY

The Challenge of Regulation in a Minimal Photoautotroph: Non-Coding RNAs in Prochlorococcus

(2008) Claudia Steglich et al.   PLoS Genetics