Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling

Insights from 20 years of bacterial genome sequencing

(2015) Miriam Land et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo

(2015) Kenji Nakahigashi et al.   BMC GENOMICS

Translatome profiling: methods for genome-scale analysis of mRNA translation

(2014) H. A. King et al.   Briefings in Functional Genomics

Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources

(2014) Gene-Wei Li et al.   CELL

Ribosome profiling: new views of translation, from single codons to genome scale

(2014) Nicholas T. Ingolia   NATURE REVIEWS GENETICS

Unprecedented High-Resolution View of Bacterial Operon Architecture Revealed by RNA Sequencing

(2014) T. Conway et al.   mBio

Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput

(2014) Emad Bahrami-Samani et al.   Wiley Interdisciplinary Reviews-RNA

EcoGene-RefSeq: EcoGene tools applied to the RefSeq prokaryotic genomes

(2013) J. Zhou et al.   BIOINFORMATICS

The tRNA Thiolation Pathway Modulates the Intracellular Redox State in Escherichia coli

(2013) T. Nakayashiki et al.   JOURNAL OF BACTERIOLOGY

Deep Coverage of theEscherichia coliProteome Enables the Assessment of False Discovery Rates in Simple Proteogenomic Experiments

(2013) Karsten Krug et al.   MOLECULAR & CELLULAR PROTEOMICS

Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting

(2012) C. Fritsch et al.   GENOME RESEARCH

EcoGene 3.0

(2012) Jindan Zhou et al.   NUCLEIC ACIDS RESEARCH

Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution

(2012) S. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

(2011) Nicholas T. Ingolia et al.   CELL

Membrane Localization of Small Proteins inEscherichia coli

(2011) Fanette Fontaine et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Selecting protein N-terminal peptides by combined fractional diagonal chromatography

(2011) An Staes et al.   Nature Protocols

Structures of the Escherichia coli ribosome with antibiotics bound near the peptidyl transferase center explain spectra of drug action

(2010) J. A. Dunkle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The A–Z of bacterial translation inhibitors

(2009) Daniel N. Wilson   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Small membrane proteins found by comparative genomics and ribosome binding site models

(2008) Matthew R. Hemm et al.   MOLECULAR MICROBIOLOGY