EcoGene 3.0

Mining GO Annotations for Improving Annotation Consistency

(2012) Daniel Faria et al.   PLoS One

Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation

(2012) S. Burge et al.   Database-The Journal of Biological Databases and Curation

COMBREX: COMputational BRidge to EXperiments

(2011) Richard J. Roberts   BIOCHEMICAL SOCIETY TRANSACTIONS

Genotype and Phenotypes of an Intestine-Adapted Escherichia coli K-12 Mutant Selected by Animal Passage for Superior Colonization

(2011) Andrew J. Fabich et al.   INFECTION AND IMMUNITY

IS5 inserts upstream of the master motility operon flhDC in a quasi-Lamarckian way

(2011) Xiaoxue Wang et al.   ISME Journal

Newly Identified Genetic Variations in Common Escherichia coli MG1655 Stock Cultures

(2011) P. L. Freddolino et al.   JOURNAL OF BACTERIOLOGY

YhiQ Is RsmJ, the Methyltransferase Responsible for Methylation of G1516 in 16S rRNA of E. coli

(2011) Georgeta N. Basturea et al.   JOURNAL OF MOLECULAR BIOLOGY

EcoliWiki: a wiki-based community resource for Escherichia coli

(2011) Brenley K. McIntosh et al.   NUCLEIC ACIDS RESEARCH

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

The UniProt-GO Annotation database in 2011

(2011) E. C. Dimmer et al.   NUCLEIC ACIDS RESEARCH

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2011) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

(2010) R. J. Roberts et al.   NUCLEIC ACIDS RESEARCH

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

(2010) S. Gama-Castro et al.   NUCLEIC ACIDS RESEARCH

EcoCyc: a comprehensive database of Escherichia coli biology

(2010) I. M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Small Stress Response Proteins in Escherichia coli: Proteins Missed by Classical Proteomic Studies

(2009) M. R. Hemm et al.   JOURNAL OF BACTERIOLOGY

Update on the Keio collection of Escherichia coli single-gene deletion mutants

(2009) Natsuko Yamamoto et al.   Molecular Systems Biology

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2009) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

What we can learn about Escherichia coli through application of Gene Ontology

(2009) James C. Hu et al.   TRENDS IN MICROBIOLOGY

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS

The impact of horizontal gene transfer in shaping operons and protein interaction networks – direct evidence of preferential attachment

(2008) Wagied Davids et al.   BMC EVOLUTIONARY BIOLOGY

Hda Monomerization by ADP Binding Promotes Replicase Clamp-mediated DnaA-ATP Hydrolysis

(2008) Masayuki Su'etsugu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Small membrane proteins found by comparative genomics and ribosome binding site models

(2008) Matthew R. Hemm et al.   MOLECULAR MICROBIOLOGY

Repression of small toxic protein synthesis by the Sib and OhsC small RNAs

(2008) Elizabeth M. Fozo et al.   MOLECULAR MICROBIOLOGY