Bacterial dispersal and drift drive microbiome diversity patterns within a population of feral hindgut fermenters

Diet contributes to urban-induced alterations in gut microbiota: experimental evidence from a wild passerine

(2020) Aimeric Teyssier et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ecological and evolutionary mechanisms underlying patterns of phylosymbiosis in host-associated microbial communities

(2020) Kevin D. Kohl   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bighorn sheep gut microbiomes associate with genetic and spatial structure across a metapopulation

(2020) Claire E. Couch et al.   Scientific Reports

Stochastic Dispersal Rather Than Deterministic Selection Explains the Spatio-Temporal Distribution of Soil Bacteria in a Temperate Grassland

(2020) Tim Richter-Heitmann et al.   Frontiers in Microbiology

Microbial transmission in animal social networks and the social microbiome

(2020) Amar Sarkar et al.   Nature Ecology & Evolution

Conservation biology needs a microbial renaissance: a call for the consideration of host-associated microbiota in wildlife management practices

(2019) Brian K. Trevelline et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Fur seal microbiota are shaped by the social and physical environment, show mother-offspring similarities and are associated with host genetic quality

(2019) Stefanie Grosser et al.   MOLECULAR ECOLOGY

Species identity dominates over environment in shaping the microbiota of small mammals

(2019) S. C. L. Knowles et al.   ECOLOGY LETTERS

Evolutionary quantitative genetics of juvenile body size in a population of feral horses reveals sexually antagonistic selection

(2019) Charlotte E. Regan et al.   EVOLUTIONARY ECOLOGY

Horizontal gene transfer in human-associated microorganisms inferred by phylogenetic reconstruction and reconciliation

(2019) Hyeonsoo Jeong et al.   Scientific Reports

Environmental and demographic drivers of male mating success vary across sequential reproductive episodes in a polygynous breeder

(2019) Jeffrey A. Manning et al.   Ecology and Evolution

Utilizing the fecal microbiota to understand foal gut transitions from birth to weaning

(2019) Ubaldo De La Torre et al.   PLoS One

Macronutrient metabolism by the human gut microbiome: major fermentation by-products and their impact on host health

(2019) Kaitlyn Oliphant et al.   Microbiome

Geographical location influences the composition of the gut microbiota in wild house mice (Mus musculus domesticus) at a fine spatial scale

(2019) Sarah Goertz et al.   PLoS One

Artificially selecting microbial communities: If we can breed dogs, why not microbiomes?

(2019) Flor I. Arias-Sánchez et al.   PLOS BIOLOGY

Dramatic Remodeling of the Gut Microbiome Around Parturition and Its Relationship With Host Serum Metabolic Changes in Sows

(2019) Xiaochang Huang et al.   Frontiers in Microbiology

Quantitative genetics of gastrointestinal strongyle burden and associated body condition in feral horses

(2019) Susannah Gold et al.   International Journal for Parasitology-Parasites and Wildlife

Microbial associations and spatial proximity predict North American moose ( Alces alces ) gastrointestinal community composition

(2019) Nicholas M. Fountain‐Jones et al.   JOURNAL OF ANIMAL ECOLOGY

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

On the relationship between phylogenetic diversity and trait diversity

(2018) Caroline M. Tucker et al.   ECOLOGY

A global comparison of the nutritive values of forage plants grown in contrasting environments

(2018) Mark A. Lee   JOURNAL OF PLANT RESEARCH

Current understanding of the human microbiome

(2018) Jack A Gilbert et al.   NATURE MEDICINE

Social network community structure and the contact-mediated sharing of commensal E. coli among captive rhesus macaques (Macaca mulatta)

(2018) Krishna Balasubramaniam et al.   PeerJ

Environment dominates over host genetics in shaping human gut microbiota

(2018) Daphna Rothschild et al.   NATURE

Microbiomes as Metacommunities: Understanding Host-Associated Microbes through Metacommunity Ecology

(2018) Elizabeth Theresa Miller et al.   TRENDS IN ECOLOGY & EVOLUTION

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

(2018) Chirag Jain et al.   Nature Communications

Gut microbiome composition is associated with spatial structuring and social interactions in semi-feral Welsh Mountain ponies

(2018) Rachael E. Antwis et al.   Microbiome

The Effects of Captivity on the Mammalian Gut Microbiome

(2017) Valerie J. McKenzie et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Gut microbial communities of American pikas (Ochotona princeps ): Evidence for phylosymbiosis and adaptations to novel diets

(2017) Kevin D. Kohl et al.   JOURNAL OF ANIMAL ECOLOGY

The Impact of Diet on the Hindgut Microbiome

(2017) Veronique Julliand et al.   JOURNAL OF EQUINE VETERINARY SCIENCE

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The evolution of the host microbiome as an ecosystem on a leash

(2017) Kevin R. Foster et al.   NATURE

Dispersal limitation promotes the diversification of the mammalian gut microbiota

(2017) Andrew H. Moeller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

Insights into Butyrate Production in a Controlled Fermentation System via Gene Predictions

(2017) S. Esquivel-Elizondo et al.   mSystems

Plants and Insects New to Sable Island, Nova Scotia

(2017) Paul Catling et al.  

Evaluating the impact of domestication and captivity on the horse gut microbiome

(2017) Jessica L. Metcalf et al.   Scientific Reports

Phylogenetic signal in phenotypic traits related to carbon source assimilation and chemical sensitivity in Acinetobacter species

(2016) Ado Van Assche et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?

(2016) Antton Alberdi et al.   TRENDS IN ECOLOGY & EVOLUTION

The Fiber Gap and the Disappearing Gut Microbiome: Implications for Human Nutrition

(2016) Edward C. Deehan et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

phylosignal: an R package to measure, test, and explore the phylogenetic signal

(2016) François Keck et al.   Ecology and Evolution

Microbial Changes during Pregnancy, Birth, and Infancy

(2016) Meital Nuriel-Ohayon et al.   Frontiers in Microbiology

Costs of social dispersal in a polygynous mammal

(2015) Lucie Debeffe et al.   BEHAVIORAL ECOLOGY

Using phylogenetics in community assembly and ecosystem functioning research

(2015) Anita Narwani et al.   FUNCTIONAL ECOLOGY

Density-dependent, central-place foraging in a grazing herbivore: competition and tradeoffs in time allocation near water

(2015) David Rozen-Rechels et al.   OIKOS

Microbiomes in light of traits: A phylogenetic perspective

(2015) J. B. H. Martiny et al.   SCIENCE

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Characterization and comparison of the bacterial microbiota in different gastrointestinal tract compartments in horses

(2015) M.C. Costa et al.   VETERINARY JOURNAL

The role of gut microbes in satisfying the nutritional demands of adult and juvenile wild, black howler monkeys (Alouatta pigra)

(2014) Katherine R. Amato et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Prepartum and Postpartum Rumen Fluid Microbiomes: Characterization and Correlation with Production Traits in Dairy Cows

(2014) Fabio S. Lima et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distribution of vegetation along environmental gradients on Sable Island, Nova Scotia

(2014) Emily J. Tissier et al.   ECOSCIENCE

Is dispersal neutral?

(2014) Winsor H. Lowe et al.   TRENDS IN ECOLOGY & EVOLUTION

Gut microbiome of the Hadza hunter-gatherers

(2014) Stephanie L. Schnorr et al.   Nature Communications

Interacting effects of age, density, and weather on survival and current reproduction for a large mammal

(2014) Emmanuelle Richard et al.   Ecology and Evolution

Fecal microbiomes of non-human primates in Western Uganda reveal species-specific communities largely resistant to habitat perturbation

(2013) Aleia I. McCord et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Increasing density leads to generalization in both coarse-grained habitat selection and fine-grained resource selection in a large mammal

(2013) Floris M. van Beest et al.   JOURNAL OF ANIMAL ECOLOGY

Identifying hidden sinks in growing populations from individual fates and movements: The feral horses of Sable Island

(2013) Adrienne L. Contasti et al.   JOURNAL OF WILDLIFE MANAGEMENT

The role of biogeography in shaping diversity of the intestinal microbiota in house mice

(2013) Miriam Linnenbrink et al.   MOLECULAR ECOLOGY

Dietary intervention impact on gut microbial gene richness

(2013) Aurélie Cotillard et al.   NATURE

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Local density and group size interacts with age and sex to determine direction and rate of social dispersal in a polygynous mammal

(2013) Paula H. Marjamäki et al.   Ecology and Evolution

Phylogenetic Distribution of Potential Cellulases in Bacteria

(2012) Renaud Berlemont et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Explaining Spatial Heterogeneity in Population Dynamics and Genetics from Spatial Variation in Resources for a Large Herbivore

(2012) Adrienne L. Contasti et al.   PLoS One

The equine intestinal microbiome

(2012) Marcio C. Costa et al.   ANIMAL HEALTH RESEARCH REVIEWS

Consistent scaling of persistence time in metapopulations

(2011) Gur Yaari et al.   ECOLOGY

Multimodel inference in ecology and evolution: challenges and solutions

(2011) C. E. GRUEBER et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Using null models to disentangle variation in community dissimilarity from variation in α-diversity

(2011) Jonathan M. Chase et al.   Ecosphere

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Sexually transmitted bacteria affect female cloacal assemblages in a wild bird

(2010) Joël White et al.   ECOLOGY LETTERS

Opposing effects of competitive exclusion on the phylogenetic structure of communities

(2010) Margaret M. Mayfield et al.   ECOLOGY LETTERS

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Multiscale analysis reveals restricted gene flow and a linear gradient in heterozygosity for an island population of feral horses

(2009) Z. L. Lucas et al.   CANADIAN JOURNAL OF ZOOLOGY

The merging of community ecology and phylogenetic biology

(2009) Jeannine Cavender-Bares et al.   ECOLOGY LETTERS