Gut microbiome composition is associated with spatial structuring and social interactions in semi-feral Welsh Mountain ponies

Social networks, cooperative breeding, and the human milk microbiome

(2018) Courtney L. Meehan et al.   AMERICAN JOURNAL OF HUMAN BIOLOGY

Social stability in semiferal ponies: networks show interannual stability alongside seasonal flexibility

(2018) Christina R. Stanley et al.   ANIMAL BEHAVIOUR

Genetic variability and ontogeny predict microbiome structure in a disease-challenged montane amphibian

(2018) Sarah M. Griffiths et al.   ISME Journal

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Amphibian chytridiomycosis outbreak dynamics are linked with host skin bacterial community structure

(2018) Kieran A. Bates et al.   Nature Communications

The hologenome concept of evolution after 10 years

(2018) Eugene Rosenberg et al.   Microbiome

Group Living and Male Dispersal Predict the Core Gut Microbiome in Wild Baboons

(2017) Laura E. Grieneisen et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

The Impact of Diet on the Hindgut Microbiome

(2017) Veronique Julliand et al.   JOURNAL OF EQUINE VETERINARY SCIENCE

A seed-recruited microbiome protects developing seedlings from disease by altering homing responses of Pythium aphanidermatum zoospores

(2017) Allison L. H. Jack et al.   PLANT AND SOIL

Microbiota fingerprints lose individually identifying features over time

(2017) David Wilkins et al.   Microbiome

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission

(2017) Sabrina Duranti et al.   Microbiome

Recognition and management of ecological refugees: A case study of the Cape mountain zebra

(2016) Jessica MD Lea et al.   BIOLOGICAL CONSERVATION

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Sex differences in the gut microbiome–brain axis across the lifespan

(2016) Eldin Jašarević et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Population-level analysis of gut microbiome variation

(2016) Gwen Falony et al.   SCIENCE

Gut Microbiotas and Host Evolution: Scaling Up Symbiosis

(2016) Michael Shapira   TRENDS IN ECOLOGY & EVOLUTION

Development of Ruminal and Fecal Microbiomes Are Affected by Weaning But Not Weaning Strategy in Dairy Calves

(2016) Sarah J. Meale et al.   Frontiers in Microbiology

Tree phyllosphere bacterial communities: exploring the magnitude of intra- and inter-individual variation among host species

(2016) Isabelle Laforest-Lapointe et al.   PeerJ

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure

(2016) Isabelle Laforest-Lapointe et al.   Microbiome

Social behavior shapes the chimpanzee pan-microbiome

(2016) A. H. Moeller et al.   Science Advances

Introduction to the proceedings of the 5th International Invasive Sea Squirt Conference, 2014

(2016) Stephan Bullard et al.   Management of Biological Invasions

Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota

(2015) Rachel N. Carmody et al.   Cell Host & Microbe

Constructing, conducting and interpreting animal social network analysis

(2015) Damien R. Farine et al.   JOURNAL OF ANIMAL ECOLOGY

Kinship, inbreeding and fine-scale spatial structure influence gut microbiota in a hindgut-fermenting tortoise

(2015) Michael L. Yuan et al.   MOLECULAR ECOLOGY

Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes

(2015) Seth R. Bordenstein et al.   PLOS BIOLOGY

Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease

(2015) Xochitl C Morgan et al.   GENOME BIOLOGY

The functionality of the gastrointestinal microbiome in non-human animals

(2015) Irene Hanning et al.   Microbiome

Diet shapes the gut microbiome of pigs during nursing and weaning

(2015) Steven A. Frese et al.   Microbiome

Ex situ Diet Influences the Bacterial Community Associated with the Skin of Red-Eyed Tree Frogs (Agalychnis callidryas)

(2014) Rachael E. Antwis et al.   PLoS One

Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice

(2014) Jun Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus)

(2013) Andrew H Loudon et al.   ISME Journal

The amphibian skin-associated microbiome across species, space and life history stages

(2013) Jordan G. Kueneman et al.   MOLECULAR ECOLOGY

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Genetic diversity and phylogenetic analysis of native mountain ponies of Britain and Ireland reveals a novel rare population

(2013) Clare L. Winton et al.   Ecology and Evolution

Mummy’s boys: sex differential maternal-offspring bonds in semi-feral horses

(2012) Christina R. Stanley et al.   BEHAVIOUR

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Gut microbiota and kin recognition

(2012) Anne Lizé et al.   TRENDS IN ECOLOGY & EVOLUTION

Bacterially enriched diet improves sexual performance of sterile male Mediterranean fruit flies

(2011) S. Gavriel et al.   JOURNAL OF APPLIED ENTOMOLOGY

Socially transmitted gut microbiota protect bumble bees against an intestinal parasite

(2011) H. Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A simple and distinctive microbiota associated with honey bees and bumble bees

(2010) VINCENT G. MARTINSON et al.   MOLECULAR ECOLOGY

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Bacteria-diet interactions affect longevity in the medfly -Ceratitis capitata

(2009) M. Ben-Yosef et al.   JOURNAL OF APPLIED ENTOMOLOGY

Structure of the social network and its influence on transmission dynamics in a honeybee colony

(2008) Dhruba Naug   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

Dynamic social networks and the implications for the spread of infectious disease

(2008) J. M Read et al.   Journal of the Royal Society Interface

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

The Macaque Gut Microbiome in Health, Lentiviral Infection, and Chronic Enterocolitis

(2008) Philip McKenna et al.   PLoS Pathogens