Transcriptomic identification and expression analysis of cold shock domain protein (CSP) genes in the marine dinoflagellate Prorocentrum minimum

New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters

(2020) Stefano Campanaro et al.   Biotechnology for Biofuels

Comparative transcriptomics of toxin synthesis genes between the non-toxin producing dinoflagellate Cochlodinium polykrikoides and toxigenic Alexandrium pacificum

(2020) Hui Wang et al.   HARMFUL ALGAE

Intraspecific variability in membrane proteome, cell growth, and morphometry of the invasive marine neurotoxic dinoflagellate Alexandrium pacificum grown in metal-contaminated conditions

(2020) Cherif Chetouhi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Effects of seawater acidification and cadmium on the antioxidant defense of flounder Paralichthys olivaceus larvae

(2020) Wenting Cui et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Transcriptome survey and toxin measurements reveal evolutionary modification and loss of saxitoxin biosynthesis genes in the dinoflagellates Amphidinium carterae and Prorocentrum micans

(2020) Hui Wang et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

CpMCA , a novel metacaspase gene from the harmful dinoflagellate Cochlodinium polykrikoides and its expression during cell death

(2018) Hui Wang et al.   GENE

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans

(2018) Benjamin J. Tully et al.   Scientific Data

Cloning and Partial Characterization of a Cold Shock Domain-Containing Protein Gene from the Dinoflagellate Scrippsiella trochoidea

(2018) Yunyan Deng et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Origin and roles of a novel copper-zinc superoxide dismutase (CuZnSOD) gene from the harmful dinoflagellate Prorocentrum minimum

(2018) Hui Wang et al.   GENE

Comparative Genomics Reveals Two Major Bouts of Gene Retroposition Coinciding with Crucial Periods of Symbiodinium Evolution

(2017) Bo Song et al.   Genome Biology and Evolution

A Novel Cyclophilin B Gene in the Red Tide Dinoflagellate Cochlodinium polykrikoides: Molecular Characterizations and Transcriptional Responses to Environmental Stresses

(2017) Sofia Abassi et al.   Biomed Research International

Transcriptomic Analyses of Scrippsiella trochoidea Reveals Processes Regulating Encystment and Dormancy in the Life Cycle of a Dinoflagellate, with a Particular Attention to the Role of Abscisic Acid

(2017) Yunyan Deng et al.   Frontiers in Microbiology

Transcriptomic profiles reveal the genome-wide responses of the harmful dinoflagellate Cochlodinium polykrikoides when exposed to the algicide copper sulfate

(2016) Ruoyu Guo et al.   BMC GENOMICS

Microbial stress response to heavy metals in the environment

(2016) Pranesha Prabhakaran et al.   RSC Advances

A CRISPR/Cas9 system adapted for gene editing in marine algae

(2016) Marianne Nymark et al.   Scientific Reports

Cold Shock Proteins: A Minireview with Special Emphasis on Csp-family of Enteropathogenic Yersinia

(2016) Riikka Keto-Timonen et al.   Frontiers in Microbiology

Characterization of Two Dinoflagellate Cold Shock Domain Proteins

(2016) Mathieu Beauchemin et al.   mSphere

Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle

(2016) M. Aranda et al.   Scientific Reports

Solution structure of the RNA-binding cold-shock domain of theChlamydomonas reinhardtiiNAB1 protein and insights into RNA recognition

(2015) Anne L. Sawyer et al.   BIOCHEMICAL JOURNAL

The genome of the truffle-parasite Tolypocladium ophioglossoides and the evolution of antifungal peptaibiotics

(2015) C. Alisha Quandt et al.   BMC GENOMICS

Alexandrium pacificum Litaker sp. nov (Group IV): Resting cyst distribution and toxin profile of vegetative cells in Bizerte Lagoon (Tunisia, Southern Mediterranean Sea)

(2015) Mouna Fertouna-Bellakhal et al.   HARMFUL ALGAE

Effect of Nitrate, Ammonium and Urea on Growth and Pinnatoxin G Production of Vulcanodinium rugosum

(2015) Eric Abadie et al.   Marine Drugs

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Analysis of EST data of the marine protist Oxyrrhis marina, an emerging model for alveolate biology and evolution

(2014) Renny Lee et al.   BMC GENOMICS

A comparative analysis of Alexandrium catenella/tamarense blooms in Annaba Bay (Algeria) and Thau lagoon (France); phosphorus limitation as a trigger

(2014) Imene Hadjadji et al.   COMPTES RENDUS BIOLOGIES

Copper and cadmium effects on growth and extracellular exudation of the marine toxic dinoflagellate Alexandrium catenella: 3D-fluorescence spectroscopy approach

(2013) Faouzi Herzi et al.   CHEMOSPHERE

Cold-Induced Cysts of the Photosynthetic Dinoflagellate Lingulodinium polyedrum Have an Arrested Circadian Bioluminescence Rhythm and Lower Levels of Protein Phosphorylation

(2013) S. Roy et al.   PLANT PHYSIOLOGY

Transcriptional responses of heat shock protein 70 (Hsp70) to thermal, bisphenol A, and copper stresses in the dinoflagellate Prorocentrum minimum

(2012) R. Guo et al.   CHEMOSPHERE

Effects of salinity, temperature and nutrients on growth, cellular characteristics and yessotoxin production of Protoceratium reticulatum

(2012) Karin Röder et al.   HARMFUL ALGAE

Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals

(2012) Till Bayer et al.   PLoS One

Dinoflagellate tandem array gene transcripts are highly conserved and not polycistronic

(2012) M. Beauchemin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pleiotropic Roles of Cold Shock Domain Proteins in Plants

(2012) Kentaro Sasaki et al.   Frontiers in Plant Science

The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation

(2012) Guillaume Blanc et al.   GENOME BIOLOGY

Comparison of structure, function and regulation of plant cold shock domain proteins to bacterial and animal cold shock domain proteins

(2011) Vijay Chaikam et al.   BMB Reports

RNA-Mediated Silencing in Algae: Biological Roles and Tools for Analysis of Gene Function

(2011) Heriberto Cerutti et al.   EUKARYOTIC CELL

Evaluation and validation of internal control genes for studying gene expression in the dinoflagellate Prorocentrum minimum using real-time PCR

(2011) Ruoyu Guo et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

The globally distributed genus Alexandrium: Multifaceted roles in marine ecosystems and impacts on human health

(2011) Donald M. Anderson et al.   HARMFUL ALGAE

Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism

(2011) R. L. Chang et al.   Molecular Systems Biology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Dinoflagellate Genome Evolution

(2010) Jennifer H. Wisecaver et al.   Annual Review of Microbiology

Role of Cold Shock Proteins in Growth of Listeria monocytogenes under Cold and Osmotic Stress Conditions

(2009) B. Schmid et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temperature tolerance and expression of heat shock protein 70 in the toxic dinoflagellate Alexandrium tamarense (Dinophyceae)

(2009) Atsushi Kobiyama et al.   HARMFUL ALGAE

Cold Shock Domain Proteins Affect Seed Germination and Growth of Arabidopsis thaliana Under Abiotic Stress Conditions

(2009) Su Jung Park et al.   PLANT AND CELL PHYSIOLOGY

Widespread recycling of processed cDNAs in dinoflagellates

(2008) Claudio H. Slamovits et al.   CURRENT BIOLOGY