RNA-Mediated Silencing in Algae: Biological Roles and Tools for Analysis of Gene Function

The Many Faces of RNAi

(2011) René F. Ketting   DEVELOPMENTAL CELL

Gene silencing by microRNAs: contributions of translational repression and mRNA decay

(2011) Eric Huntzinger et al.   NATURE REVIEWS GENETICS

Evolution and Functional Diversification ofMIRNAGenes

(2011) Josh T. Cuperus et al.   PLANT CELL

Identification of the UMP Synthase Gene by Establishment of Uracil Auxotrophic Mutants and the Phenotypic Complementation System in the Marine Diatom Phaeodactylum tricornutum

(2011) T. Sakaguchi et al.   PLANT PHYSIOLOGY

Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics

(2011) C. J. Gobler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Vigilance and Validation: Keys to Success in RNAi Screening

(2010) Frederic D. Sigoillot et al.   ACS Chemical Biology

Biochemical Principles of Small RNA Pathways

(2010) Qinghua Liu et al.   Annual Review of Biochemistry

Regulation of mRNA Translation and Stability by microRNAs

(2010) Marc Robert Fabian et al.   Annual Review of Biochemistry

MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data

(2010) Anthony Mathelier et al.   BIOINFORMATICS

RNA interference pathways in filamentous fungi

(2010) Liande Li et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

An inducible artificial microRNA system for Chlamydomonas reinhardtii confirms a key role for heat shock factor 1 in regulating thermotolerance

(2010) Stefan Schmollinger et al.   CURRENT GENETICS

The voyage of the microbial eukaryote

(2010) Alexandra Z Worden et al.   CURRENT OPINION IN MICROBIOLOGY

Origin of the polycomb repressive complex 2 and gene silencing by an E(z) homolog in the unicellular alga Chlamydomonas

(2010) Scott Shaver et al.   Epigenetics

Genetic Engineering of Algae for Enhanced Biofuel Production

(2010) Randor Radakovits et al.   EUKARYOTIC CELL

MicroRNAs and gene regulatory networks: managing the impact of noise in biological systems

(2010) H. Herranz et al.   GENES & DEVELOPMENT

The role of small non-coding RNAs in genome stability and chromatin organization

(2010) J. C. van Wolfswinkel et al.   JOURNAL OF CELL SCIENCE

MicroRNA Functions in Stress Responses

(2010) Anthony K.L. Leung et al.   MOLECULAR CELL

Global phytoplankton decline over the past century

(2010) Daniel G. Boyce et al.   NATURE

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

(2010) J. Mark Cock et al.   NATURE

Desperately seeking microRNA targets

(2010) Marshall Thomas et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

TheChlorella variabilisNC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex

(2010) Guillaume Blanc et al.   PLANT CELL

RNA-Seq Analysis of Sulfur-DeprivedChlamydomonasCells Reveals Aspects of Acclimation Critical for Cell Survival

(2010) David González-Ballester et al.   PLANT CELL

Cucumber mosaic virus 2b protein inhibits RNA silencing pathways in green alga Chlamydomonas reinhardtii

(2010) Joon-Woo Ahn et al.   PLANT CELL REPORTS

Identification of miRNA from Porphyra yezoensis by High-Throughput Sequencing and Bioinformatics Analysis

(2010) Chengwei Liang et al.   PLoS One

Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas

(2010) Fadia Ibrahim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Outlook on Microalgal Biofuels

(2010) R. H. Wijffels et al.   SCIENCE

Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri

(2010) S. E. Prochnik et al.   SCIENCE

Hairpin dsRNA does not trigger RNA interference in Candida albicans cells

(2010) Janet F. Staab et al.   YEAST

Small silencing RNAs: State-of-the-art

(2009) Dirk Grimm   ADVANCED DRUG DELIVERY REVIEWS

miRNPs: versatile regulators of gene expression in vertebrate cells1

(2009) Joan A. Steitz et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion

(2009) Kevin J. Peterson et al.   BIOESSAYS

Potential impact of stress activated retrotransposons on genome evolution in a marine diatom

(2009) Florian Maumus et al.   BMC GENOMICS

Small RNAs as Guardians of the Genome

(2009) Colin D. Malone et al.   CELL

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

Characterization of the Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) Gene from the Halotolerant Alga Dunaliella salina and Inhibition of Its Expression by RNAi

(2009) Yanlong Jia et al.   CURRENT MICROBIOLOGY

Small silencing RNAs: an expanding universe

(2009) Megha Ghildiyal et al.   NATURE REVIEWS GENETICS

Gene silencing in the marine diatom Phaeodactylum tricornutum

(2009) Valentina De Riso et al.   NUCLEIC ACIDS RESEARCH

Distinct and overlapping roles for two Dicer-like proteins in the RNA interference pathways of the ancient eukaryote Trypanosoma brucei

(2009) K. L. Patrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transient gene suppression in a red alga, Cyanidioschyzon merolae 10D

(2009) Mio Ohnuma et al.   PROTOPLASMA

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

(2009) A. Z. Worden et al.   SCIENCE

RNAi in Budding Yeast

(2009) I. A. Drinnenberg et al.   SCIENCE

Genomic Insights into Marine Microalgae

(2008) Micaela S. Parker et al.   Annual Review of Genetics

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes

(2008) F. Burki et al.   Biology Letters

Importance of Translation and Nonnucleolytic Ago Proteins for On-Target RNA Interference

(2008) Ligang Wu et al.   CURRENT BIOLOGY

Beyond silencing—engineering applications of RNA interference and antisense technology for altering cellular phenotype

(2008) Colin G Hebert et al.   CURRENT OPINION IN BIOTECHNOLOGY

A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation

(2008) Lucia Daxinger et al.   EMBO JOURNAL

Two different clades of copia-like retrotransposons in the red alga, Porphyra yezoensis

(2008) Suresh Peddigari et al.   GENE

Nuclear gene targeting in Chlamydomonas as exemplified by disruption of the PHOT gene

(2008) Boris Zorin et al.   GENE

Unstable RNAi Effects Through Epigenetic Silencing of an Inverted Repeat Transgene in Chlamydomonas reinhardtii

(2008) T. Yamasaki et al.   GENETICS

Diversification of the Core RNA Interference Machinery in Chlamydomonas reinhardtii and the Role of DCL1 in Transposon Silencing

(2008) J. A. Casas-Mollano et al.   GENETICS

The Pathway via D-Galacturonate/L-Galactonate Is Significant for Ascorbate Biosynthesis inEuglena gracilis

(2008) Takahiro Ishikawa et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Inhibition of pds Gene Expression via the RNA Interference Approach in Dunaliella salina (Chlorophyta)

(2008) Guohua Sun et al.   MARINE BIOTECHNOLOGY

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

(2008) Chris Bowler et al.   NATURE

The evolution of RNAi as a defence against viruses and transposable elements

(2008) D. J Obbard et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Gene silencing by artificial microRNAs in Chlamydomonas

(2008) Tao Zhao et al.   PLANT JOURNAL

Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances

(2008) Qiang Hu et al.   PLANT JOURNAL

Highly specific gene silencing by artificial microRNAs in the unicellular alga Chlamydomonas reinhardtii

(2008) Attila Molnar et al.   PLANT JOURNAL

The MUT9p kinase phosphorylates histone H3 threonine 3 and is necessary for heritable epigenetic silencing in Chlamydomonas

(2008) J. A. Casas-Mollano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Argonaute protein family

(2008) Julia Höck et al.   GENOME BIOLOGY