Comparative transcriptomic analysis provides insights into the coordinated mechanisms of leaves and roots response to cold stress in Common Vetch

Transcriptomic analyses of Pinus koraiensis under different cold stresses

(2020) Fang Wang et al.   BMC GENOMICS

Molecular bases for drought tolerance in common vetch: designing new molecular breeding tools

(2020) Lucía De la Rosa et al.   BMC PLANT BIOLOGY

Coordinated mechanisms of leaves and roots in response to drought stress underlying full-length transcriptome profiling in Vicia sativa L

(2020) Xueyang Min et al.   BMC PLANT BIOLOGY

Allele-aware chromosome-level genome assembly and efficient transgene-free genome editing for the autotetraploid cultivated alfalfa

(2020) Haitao Chen et al.   Nature Communications

Physiological and Molecular Mechanism Involved in Cold Stress Tolerance in Plants

(2020) Faujiah Nurhasanah Ritonga et al.   Plants-Basel

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Full-length transcript sequencing and comparative transcriptomic analysis to evaluate the contribution of osmotic and ionic stress components towards salinity tolerance in the roots of cultivated alfalfa (Medicago sativa L.)

(2019) Dong Luo et al.   BMC PLANT BIOLOGY

Cold acclimation by the CBF–COR pathway in a changing climate: Lessons from Arabidopsis thaliana

(2019) Yukun Liu et al.   PLANT CELL REPORTS

The Versatility of SMRT Sequencing

(2019) Matthew Hestand et al.   Genes

Single-molecule real-time (SMRT) isoform sequencing (Iso-Seq) in plants: The status of the bioinformatics tools to unravel the transcriptome complexity

(2019) Yubang Gao et al.   Current Bioinformatics

De novo transcriptome sequencing and gene expression profiling of Magnolia wufengensis in response to cold stress

(2019) Shixin Deng et al.   BMC PLANT BIOLOGY

De novo transcriptome sequencing and gene expression profiling of sweet potato leaves during low temperature stress and recovery

(2019) Chang Yoon Ji et al.   GENE

Genomic identification of AP2/ERF transcription factors and functional characterization of two cold resistance-related AP2/ERF genes in celery (Apium graveolens L.)

(2019) Meng-Yao Li et al.   PLANTA

Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe

(2019) Shouli Feng et al.   BMC PLANT BIOLOGY

Transcriptome profiling of Populus tomentosa under cold stress

(2019) Xiaoyu Yang et al.   INDUSTRIAL CROPS AND PRODUCTS

Identification of Genes Differentially Expressed in Response to Cold in Pisum sativum Using RNA Sequencing Analyses

(2019) Nasser Bahrman et al.   Plants-Basel

AtPR5K2, a PR5-Like Receptor Kinase, Modulates Plant Responses to Drought Stress by Phosphorylating Protein Phosphatase 2Cs

(2019) Dongwon Baek et al.   Frontiers in Plant Science

Transcriptome profiling using Illumina- and SMRT-based RNA-seq of hot pepper for in-depth understanding of genes involved in CMV infection

(2018) Chunhui Zhu et al.   GENE

Global insights of protein responses to cold stress in plants: Signaling, defence, and degradation

(2018) Seyyedeh-Sanam Kazemi-Shahandashti et al.   JOURNAL OF PLANT PHYSIOLOGY

Molecular Regulation of CBF Signaling in Cold Acclimation

(2018) Yiting Shi et al.   TRENDS IN PLANT SCIENCE

The SAUR gene family: the plant’s toolbox for adaptation of growth and development

(2018) Niek Stortenbeker et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cold signaling in plants: Insights into mechanisms and regulation

(2018) Xiaoyu Guo et al.   Journal of Integrative Plant Biology

Single-Molecule Sequencing: Towards Clinical Applications

(2018) Adam Ameur et al.   TRENDS IN BIOTECHNOLOGY

European marketable grain legume seeds: Further insight into phenolic compounds profiles

(2017) Sara C.Q. Magalhães et al.   FOOD CHEMISTRY

An atypical R2R3 MYB transcription factor increases cold hardiness by CBF-dependent and CBF-independent pathways in apple

(2017) Yinpeng Xie et al.   NEW PHYTOLOGIST

Comparative transcriptomic analysis of two Vicia sativa L. varieties with contrasting responses to cadmium stress reveals the important role of metal transporters in cadmium tolerance

(2017) Haiyun Rui et al.   PLANT AND SOIL

De Novo Transcriptome Sequencing in Passiflora edulis Sims to Identify Genes and Signaling Pathways Involved in Cold Tolerance

(2017) Sian Liu et al.   Forests

Overexpressing the Sedum alfredii Cu/Zn Superoxide Dismutase Increased Resistance to Oxidative Stress in Transgenic Arabidopsis

(2017) Zhen Li et al.   Frontiers in Plant Science

Transcriptome Analyses Reveal Candidate Pod Shattering-Associated Genes Involved in the Pod Ventral Sutures of Common Vetch (Vicia sativa L.)

(2017) Rui Dong et al.   Frontiers in Plant Science

Plant hormone-mediated regulation of stress responses

(2016) Vivek Verma et al.   BMC PLANT BIOLOGY

Abiotic Stress Signaling and Responses in Plants

(2016) Jian-Kang Zhu   CELL

Role of Cyclic Nucleotide Gated Channels in Stress Management in Plants

(2016) Saroj K. Jha et al.   CURRENT GENOMICS

Overexpression of the Medicago falcata NAC transcription factor MfNAC3 enhances cold tolerance in Medicago truncatula

(2016) Yueting Qu et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Common Vetch (Vicia sativa) as a New Starch Source: Its Thermal, Rheological and Structural Properties After Acid Hydrolysis

(2016) Camila Delinski Bet et al.   Food Biophysics

Root-to-shoot signalling: integration of diverse molecules, pathways and functions

(2016) Sergey Shabala et al.   FUNCTIONAL PLANT BIOLOGY

Overexpression of a novel NAC-type tomato transcription factor, SlNAM1 , enhances the chilling stress tolerance of transgenic tobacco

(2016) Xiao-Dong Li et al.   JOURNAL OF PLANT PHYSIOLOGY

Thecbfstriple mutants reveal the essential functions ofCBFsin cold acclimation and allow the definition of CBF regulons inArabidopsis

(2016) Yuxin Jia et al.   NEW PHYTOLOGIST

Auxin response factors

(2016) John William Chandler   PLANT CELL AND ENVIRONMENT

Breeding approaches and genomics technologies to increase crop yield under low-temperature stress

(2016) Uday Chand Jha et al.   PLANT CELL REPORTS

Mutational Evidence for the Critical Role of CBF Genes in Cold Acclimation in Arabidopsis

(2016) Chunzhao Zhao et al.   PLANT PHYSIOLOGY

CNGC2 Is a Ca 2+ Influx Channel That Prevents Accumulation of Apoplastic Ca 2+ in the Leaf

(2016) Yan Wang et al.   PLANT PHYSIOLOGY

Transcriptome Response Mediated by Cold Stress in Lotus japonicus

(2016) Pablo I. Calzadilla et al.   Frontiers in Plant Science

Hormonal control of cold stress responses in plants

(2015) Marina Eremina et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Comparative Analysis of Anther Transcriptome Profiles of Two Different Rice Male Sterile Lines Genotypes under Cold Stress

(2015) Bin Bai et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genetic mechanisms of abiotic stress tolerance that translate to crop yield stability

(2015) Michael V. Mickelbart et al.   NATURE REVIEWS GENETICS

Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network

(2015) Sunchung Park et al.   PLANT JOURNAL

Abscisic-acid-dependent basic leucine zipper (bZIP) transcription factors in plant abiotic stress

(2015) Aditya Banerjee et al.   PROTOPLASMA

STRESSing the role of the plant circadian clock

(2015) Pil Joon Seo et al.   TRENDS IN PLANT SCIENCE

ROS mediated MAPK signaling in abiotic and biotic stress- striking similarities and differences

(2015) Siddhi K. Jalmi et al.   Frontiers in Plant Science

proovread : large-scale high-accuracy PacBio correction through iterative short read consensus

(2014) Thomas Hackl et al.   BIOINFORMATICS

Alpine climate alters the relationships between leaf and root morphological traits but not chemical traits

(2014) Yan Geng et al.   OECOLOGIA

Cold acclimation-induced freezing tolerance ofMedicago truncatulaseedlings is negatively regulated by ethylene

(2014) Mingui Zhao et al.   PHYSIOLOGIA PLANTARUM

A low temperature-inducible protein AtSRC2 enhances the ROS-producing activity of NADPH oxidase AtRbohF

(2013) Tomoko Kawarazaki et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Biogas production from catch crops: Evaluation of biomass yield and methane potential of catch crops in organic crop rotations

(2013) Beatriz Molinuevo-Salces et al.   BIOMASS & BIOENERGY

Benchmarking short sequence mapping tools

(2013) Ayat Hatem et al.   BMC BIOINFORMATICS

Cold stress signaling networks in Arabidopsis

(2013) Jin Jeon et al.   JOURNAL OF PLANT BIOLOGY

Cloning and characterization of cold, salt and drought inducible C-repeat binding factor gene from a highly cold adapted ecotype of Lepidium latifolium L.

(2013) M. Akhtar et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

The interaction of plant biotic and abiotic stresses: from genes to the field

(2012) N. J. Atkinson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Drought, salt, and temperature stress-induced metabolic rearrangements and regulatory networks

(2012) J. Krasensky et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cold Signaling via the Two-Component Signaling System

(2012) Jungmook Kim et al.   Molecular Plant

Ethylene Signaling Negatively Regulates Freezing Tolerance by Repressing Expression ofCBFand Type-AARRGenes inArabidopsis

(2012) Yiting Shi et al.   PLANT CELL

Arabidopsis Response Regulator1 and Arabidopsis Histidine Phosphotransfer Protein2 (AHP2), AHP3, and AHP5 Function in Cold Signaling

(2012) J. Jeon et al.   PLANT PHYSIOLOGY

CDPKs in immune and stress signaling

(2012) Marie Boudsocq et al.   TRENDS IN PLANT SCIENCE

Engineering Cold Stress Tolerance in Crop Plants

(2011) Gulzar S. Sanghera et al.   CURRENT GENOMICS

CIRCADIAN CLOCK-ASSOCIATED 1 and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis

(2011) M. A. Dong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CBF-dependent signaling pathway: A key responder to low temperature stress in plants

(2010) M.Q. Zhou et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

A Subset of Cytokinin Two-component Signaling System Plays a Role in Cold Temperature Stress Response inArabidopsis

(2010) Jin Jeon et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Molecular Basis of Plant Cold Acclimation: Insights Gained from Studying the CBF Cold Response Pathway

(2010) M. F. Thomashow   PLANT PHYSIOLOGY

Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants

(2010) Sarvajeet Singh Gill et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice

(2009) Mukesh Jain et al.   FEBS Journal

Constitutive activation of stress-inducible genes in abrassinosteroid-insensitive 1(bri1) mutant results in higher tolerance to cold

(2009) Sun Young Kim et al.   PHYSIOLOGIA PLANTARUM

Reactive oxygen species in abiotic stress signaling

(2009) Pinja Jaspers et al.   PHYSIOLOGIA PLANTARUM

Transcript Profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR Arrhythmic Triple Mutant Reveals a Role for the Circadian Clock in Cold Stress Response

(2009) Norihito Nakamichi et al.   PLANT AND CELL PHYSIOLOGY

Characterization of potato (Solanum tuberosum) and tomato (Solanum lycopersicum) protein phosphatases type 2A catalytic subunits and their involvement in stress responses

(2009) Silvia Marina País et al.   PLANTA

Screening boreal energy crops and crop residues for methane biofuel production

(2008) A. Lehtomäki et al.   BIOMASS & BIOENERGY

Physiological integration of roots and shoots in plant defense strategies links above- and belowground herbivory

(2008) Ian Kaplan et al.   ECOLOGY LETTERS

Signal transduction during cold stress in plants

(2008) Amolkumar U. Solanke et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS