Rapid and highly efficient genomic engineering with a novel iEditing device for programming versatile extracellular electron transfer of electroactive bacteria

Microbial U Isotope Fractionation Depends on the U(VI) Reduction Rate

(2020) Anirban Basu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Rediverting Electron Flux with an Engineered CRISPR-ddAsCpf1 System to Enhance the Pollutant Degradation Capacity of Shewanella oneidensis

(2020) Jie Li et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae

(2020) Andy O. Leu et al.   ISME Journal

Recombineering for Genetic Engineering of Natural Product Biosynthetic Pathways

(2020) Muhammad Nazeer Abbasi et al.   TRENDS IN BIOTECHNOLOGY

The long journey towards standards for engineering biosystems

(2020) Jacob Beal et al.   EMBO REPORTS

CRISPR Tools To Control Gene Expression in Bacteria

(2020) Antoine Vigouroux et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Extracellular electron transfer-dependent anaerobic oxidation of ammonium by anammox bacteria

(2020) Dario R. Shaw et al.   Nature Communications

Computational Tools and Resources Supporting CRISPR-Cas Experiments

(2020) Pawel Sledzinski et al.   Cells

Non-antibiotic pharmaceuticals enhance the transmission of exogenous antibiotic resistance genes through bacterial transformation

(2020) Yue Wang et al.   ISME Journal

Precise Replacement of Saccharomyces cerevisiae Proteasome Genes with Human Orthologs by an Integrative Targeting Method

(2020) Christopher M. Yellman   G3-Genes Genomes Genetics

Development and Application of CRISPR/Cas in Microbial Biotechnology

(2020) Wentao Ding et al.   Frontiers in Bioengineering and Biotechnology

A Synthetic Plasmid Toolkit for Shewanella oneidensis MR-1

(2019) Yingxiu Cao et al.   Frontiers in Microbiology

Gene Editing and Systems Biology Tools for Pesticide Bioremediation: A Review

(2019) Shweta Jaiswal et al.   Frontiers in Microbiology

Phototrophic extracellular electron uptake is linked to carbon dioxide fixation in the bacterium Rhodopseudomonas palustris

(2019) Michael S. Guzman et al.   Nature Communications

Diversifying the structure of zinc finger nucleases for high-precision genome editing

(2019) David E. Paschon et al.   Nature Communications

Adaptive laboratory evolution of a genome-reduced Escherichia coli

(2019) Donghui Choe et al.   Nature Communications

A versatile platform strain for high-fidelity multiplex genome editing

(2019) Robert G Egbert et al.   NUCLEIC ACIDS RESEARCH

Electroactive microorganisms in bioelectrochemical systems

(2019) Bruce E. Logan et al.   NATURE REVIEWS MICROBIOLOGY

Structure of Microbial Nanowires Reveals Stacked Hemes that Transport Electrons over Micrometers

(2019) Fengbin Wang et al.   CELL

The next generation of CRISPR–Cas technologies and applications

(2019) Adrian Pickar-Oliver et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance

(2019) Tanita Wein et al.   Nature Communications

Efficient and Precise Genome Editing in Shewanella with Recombineering and CRISPR/Cas9-Mediated Counter-Selection

(2019) Anna D. Corts et al.   ACS Synthetic Biology

How Thermophilic Gram-Positive Organisms Perform Extracellular Electron Transfer: Characterization of the Cell Surface Terminal Reductase OcwA

(2019) N. L. Costa et al.   mBio

Overexpression of the adenylate cyclase gene cyaC facilitates current generation by Shewanella oneidensis in bioelectrochemical systems

(2019) Takuya Kasai et al.   BIOELECTROCHEMISTRY

Endogenous CRISPR-Cas System-Based Genome Editing and Antimicrobials: Review and Prospects

(2019) Yingjun Li et al.   Frontiers in Microbiology

Deciphering the Variability of Stable Isotope (C, Cl) Fractionation of Tetrachloroethene Biotransformation by Desulfitobacterium strains Carrying Different Reductive Dehalogenases Enzymes

(2019) Johannes Büsing et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

A bacterial gene-drive system efficiently edits and inactivates a high copy number antibiotic resistance locus

(2019) J. Andrés Valderrama et al.   Nature Communications

How bacteria control the CRISPR-Cas arsenal

(2018) Lina M Leon et al.   CURRENT OPINION IN MICROBIOLOGY

Construction of a high-efficiency cloning system using the Golden Gate method and I-SceI endonuclease for targeted gene replacement in Bacillus anthracis

(2018) Tiantian Wang et al.   JOURNAL OF BIOTECHNOLOGY

An engineered Calvin-Benson-Bassham cycle for carbon dioxide fixation in Methylobacterium extorquens AM1

(2018) Lennart Schada von Borzyskowski et al.   METABOLIC ENGINEERING

Pseudomonas putida as a functional chassis for industrial biocatalysis: From native biochemistry to trans -metabolism

(2018) Pablo I. Nikel et al.   METABOLIC ENGINEERING

CRISPR-based genomic tools for the manipulation of genetically intractable microorganisms

(2018) Rebecca S. Shapiro et al.   NATURE REVIEWS MICROBIOLOGY

An engineered Pseudomonas putida can simultaneously degrade organophosphates, pyrethroids and carbamates

(2018) Ting Gong et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Developing a Synthetic Biology Toolkit for Comamonas testosteroni, an Emerging Cellular Chassis for Bioremediation

(2018) Qiang Tang et al.   ACS Synthetic Biology

A flavin-based extracellular electron transfer mechanism in diverse Gram-positive bacteria

(2018) Samuel H. Light et al.   NATURE

Modular engineering to increase intracellular NAD(H/+) promotes rate of extracellular electron transfer of Shewanella oneidensis

(2018) Feng Li et al.   Nature Communications

Generation of Markerless Deletions in the Nosocomial Pathogen Clostridium difficile by Induction of DNA Double-Strand Breaks

(2018) Elena-Stella Theophilou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Outer Membrane Vesicles of Aeromonas hydrophila ATCC® 7966TM: A Proteomic Analysis and Effect on Host Cells

(2018) Eric Daniel Avila-Calderón et al.   Frontiers in Microbiology

Air pollution alters Staphylococcus aureus and Streptococcus pneumoniae biofilms, antibiotic tolerance and colonisation

(2017) Shane. J. K. Hussey et al.   ENVIRONMENTAL MICROBIOLOGY

Enhancing Extracellular Electron Transfer of Shewanella oneidensis MR-1 through Coupling Improved Flavin Synthesis and Metal-Reducing Conduit for Pollutant Degradation

(2017) Di Min et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genomic and transcriptomic landscape of Escherichia coli BL21(DE3)

(2017) Sinyeon Kim et al.   NUCLEIC ACIDS RESEARCH

Engineering a Native Inducible Expression System in Shewanella oneidensis to Control Extracellular Electron Transfer

(2017) Elizabeth A. West et al.   ACS Synthetic Biology

Construction of an easy-to-use CRISPR-Cas9 system by patching a newly designed EXIT circuit

(2017) Qiang Tang et al.   Journal of Biological Engineering

DNA damage-induced Lok/CHK2 activation compromises germline stem cell self-renewal and lineage differentiation

(2016) Xing Ma et al.   DEVELOPMENT

Origins of Programmable Nucleases for Genome Engineering

(2016) Srinivasan Chandrasegaran et al.   JOURNAL OF MOLECULAR BIOLOGY

Extracellular electron transfer mechanisms between microorganisms and minerals

(2016) Liang Shi et al.   NATURE REVIEWS MICROBIOLOGY

Examining a DNA Replication Requirement for Bacteriophage λ Red- and Rac Prophage RecET-Promoted Recombination in Escherichia coli

(2016) Lynn C. Thomason et al.   mBio

A high-efficiency recombineering system with PCR-based ssDNA in Bacillus subtilis mediated by the native phage recombinase GP35

(2015) Zhaopeng Sun et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

EnhancedShewanellabiofilm promotes bioelectricity generation

(2015) Ting Liu et al.   BIOTECHNOLOGY AND BIOENGINEERING

Bacterial Recombineering: Genome Engineering via Phage-Based Homologous Recombination

(2015) Gur Pines et al.   ACS Synthetic Biology

Enhancing Bidirectional Electron Transfer of Shewanella oneidensis by a Synthetic Flavin Pathway

(2015) Yun Yang et al.   ACS Synthetic Biology

Off-target Effects in CRISPR/Cas9-mediated Genome Engineering

(2015) Xiao-Hui Zhang et al.   Molecular Therapy-Nucleic Acids

High-Efficiency Scarless Genetic Modification in Escherichia coli by Using Lambda Red Recombination and I-SceI Cleavage

(2014) Junjie Yang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A versatile and efficient markerless gene disruption system forAcidithiobacillus thiooxidans: application for characterizing a copper tolerance related multicopper oxidase gene

(2014) Qing Wen et al.   ENVIRONMENTAL MICROBIOLOGY

Creating a monomeric endonuclease TALE-I-SceI with high specificity and low genotoxicity in human cells

(2014) Jianfei Lin et al.   NUCLEIC ACIDS RESEARCH

A trans-outer membrane porin-cytochrome protein complex for extracellular electron transfer byGeobacter sulfurreducens PCA

(2014) Yimo Liu et al.   Environmental Microbiology Reports

Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression

(2013) Lei S. Qi et al.   CELL

Positive and negative selection using the tetA-sacB cassette: recombineering and P1 transduction in Escherichia coli

(2013) Xin-tian Li et al.   NUCLEIC ACIDS RESEARCH

A Photometric High-Throughput Method for Identification of Electrochemically Active Bacteria Using a WO3 Nanocluster Probe

(2013) Shi-Jie Yuan et al.   Scientific Reports

Full-length RecE enhances linear-linear homologous recombination and facilitates direct cloning for bioprospecting

(2012) Jun Fu et al.   NATURE BIOTECHNOLOGY

Redundant phenazine operons in Pseudomonas aeruginosa exhibit environment-dependent expression and differential roles in pathogenicity

(2012) D. A. Recinos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biochemical characterization of purified OmcS, a c-type cytochrome required for insoluble Fe(III) reduction in Geobacter sulfurreducens

(2011) Xinlei Qian et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coli

(2011) C. Shee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impacts of Shewanella oneidensis c-type cytochromes on aerobic and anaerobic respiration

(2010) Haichun Gao et al.   Microbial Biotechnology

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Towards environmental systems biology of Shewanella

(2008) James K. Fredrickson et al.   NATURE REVIEWS MICROBIOLOGY