Host–Pathogen Interactions between Xanthomonas fragariae and Its Host Fragaria × ananassa Investigated with a Dual RNA-Seq Analysis

Advances on plant-pathogen interactions from molecular toward systems biology perspectives

(2017) Rémi Peyraud et al.   PLANT JOURNAL

Analysis of the grape (Vitis vinifera L.) thaumatin-like protein (TLP) gene family and demonstration that TLP29 contributes to disease resistance

(2017) Xiaoxiao Yan et al.   Scientific Reports

Microbiological features and clinical impact of the type VI secretion system (T6SS) in Acinetobacter baumannii isolates causing bacteremia

(2017) Jungok Kim et al.   Virulence

Ethylene Role in Plant Growth, Development and Senescence: Interaction with Other Phytohormones

(2017) Noushina Iqbal et al.   Frontiers in Plant Science

Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity

(2017) Patrick P Edger et al.   GigaScience

Identification of a novel type III secretion-associated outer membrane-bound protein from Xanthomonas campestris pv. campestris

(2017) Lei Li et al.   Scientific Reports

HpaB-Dependent Secretion of Type III Effectors in the Plant Pathogens Ralstonia solanacearum and Xanthomonas campestris pv. vesicatoria

(2017) Fabien Lonjon et al.   Scientific Reports

Gene expression atlas of fruit ripening and transcriptome assembly from RNA-seq data in octoploid strawberry (Fragaria × ananassa)

(2017) José F. Sánchez-Sevilla et al.   Scientific Reports

Channel formation by RTX-toxins of pathogenic bacteria: Basis of their biological activity

(2016) Roland Benz   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Linocin and OmpW Are Involved in Attachment of the Cystic Fibrosis-Associated Pathogen Burkholderia cepacia Complex to Lung Epithelial Cells and Protect Mice against Infection

(2016) Siobhán McClean et al.   INFECTION AND IMMUNITY

Metabolic Response of Strawberry (Fragaria x ananassa) Leaves Exposed to the Angular Leaf Spot Bacterium (Xanthomonas fragariae)

(2016) Min-Sun Kim et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Chloroplasts at work during plant innate immunity

(2016) Irene Serrano et al.   JOURNAL OF EXPERIMENTAL BOTANY

Expression of resistance gene analogs in woodland strawberry (Fragaria vesca) during infection with Phytophthora cactorum

(2016) Xiao-Ren Chen et al.   MOLECULAR GENETICS AND GENOMICS

Gram-negative phytopathogenic bacteria, all hemibiotrophs after all?

(2016) Yvan Kraepiel et al.   MOLECULAR PLANT PATHOLOGY

Global Pattern of Gene Expression ofXanthomonas axonopodispv.glycinesWithin Soybean Leaves

(2016) Tiyakhon Chatnaparat et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defense responses to Erwinia amylovora pathogen infection

(2016) Tim Kamber et al.   Scientific Reports

Inhibition of Xanthomonas fragariae, Causative Agent of Angular Leaf Spot of Strawberry, through Iron Deprivation

(2016) Peter M. Henry et al.   Frontiers in Microbiology

Comparative Secretome Analysis ofRalstonia solanacearumType 3 Secretion-Associated Mutants Reveals a Fine Control of Effector Delivery, Essential for Bacterial Pathogenicity

(2015) Fabien Lonjon et al.   MOLECULAR & CELLULAR PROTEOMICS

The Transporter Classification Database (TCDB): recent advances

(2015) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

Type VI secretion system: secretion by a contractile nanomachine

(2015) Marek Basler   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Unbalanced Activation of Glutathione Metabolic Pathways Suggests Potential Involvement in Plant Defense against the Gall Midge Mayetiola destructor in Wheat

(2015) Xuming Liu et al.   Scientific Reports

The cytochrome P450 superfamily: Key players in plant development and defense

(2015) Jun XU et al.   Journal of Integrative Agriculture

Chloroplasts play a central role in plant defence and are targeted by pathogen effectors

(2015) Marta de Torres Zabala et al.   Nature Plants

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The VgrG Proteins Are “à la Carte” Delivery Systems for Bacterial Type VI Effectors

(2014) Abderrahman Hachani et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Lipopolysaccharide Export Pathway in Escherichia coli: Structure, Organization and Regulated Assembly of the Lpt Machinery

(2014) Alessandra Polissi et al.   Marine Drugs

The YscU/FlhB homologue HrcU from Xanthomonas controls type III secretion and translocation of early and late substrates

(2014) J. Hausner et al.   MICROBIOLOGY-SGM

Xanthomonas citrisubsp.citriType IV Pilus Is Required for Twitching Motility, Biofilm Development, and Adherence

(2014) German Dunger et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Resistance and systemic dispersal ofXanthomonas fragariaein strawberry germplasm (FragariaL.)

(2014) M. Bestfleisch et al.   PLANT PATHOLOGY

Draft genome sequence of Xanthomonas fragariae reveals reductive evolution and distinct virulence-related gene content

(2013) Joachim Vandroemme et al.   BMC GENOMICS

Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species

(2013) H. Hirakawa et al.   DNA RESEARCH

Establishment of a rapid, inexpensive protocol for extraction of high quality RNA from small amounts of strawberry plant tissues and other recalcitrant fruit crops

(2013) Anastasis Christou et al.   GENE

High Risk Strawberry Viruses by Region in the United States and Canada: Implications for Certification, Nurseries, and Fruit Production

(2013) Robert R. Martin et al.   PLANT DISEASE

Development ofXanthomonas fragariaepopulations and disease progression in strawberry plants after spray-inoculation of leaves

(2013) P. Kastelein et al.   PLANT PATHOLOGY

Comparative RNA-Seq Analysis of Early-Infected Peach Leaves by the Invasive Phytopathogen Xanthomonas arboricola pv. pruni

(2013) Didier Socquet-Juglard et al.   PLoS One

Cell Wall Degrading Enzyme Induced Rice Innate Immune Responses Are Suppressed by the Type 3 Secretion System Effectors XopN, XopQ, XopX and XopZ of Xanthomonas oryzae pv. oryzae

(2013) Dipanwita Sinha et al.   PLoS One

Glutathione and tryptophan metabolism are required forArabidopsisimmunity during the hypersensitive response to hemibiotrophs

(2013) Kei Hiruma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impacts of Diversification of Cytochrome P450 on Plant Metabolism

(2012) Masaharu Mizutani   BIOLOGICAL & PHARMACEUTICAL BULLETIN

Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing

(2012) Wambui Njuguna et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular Crosstalk Between PAMP-Triggered Immunity and Photosynthesis

(2012) Vera Göhre et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Type VI secretion requires a dynamic contractile phage tail-like structure

(2012) M. Basler et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Structural biology of type VI secretion systems

(2012) E. Cascales et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Proteomic studies highlight outer-membrane proteins related to biofilm development in the marine bacterium Pseudoalteromonas sp. D41

(2012) Andrés Ritter et al.   PROTEOMICS

Leucine-rich repeat (LRR) proteins: Integrators of pattern recognition and signaling in immunity

(2011) Aylwin Ng et al.   Autophagy

Fortunella margarita Transcriptional Reprogramming Triggered by Xanthomonas citri subsp. citri

(2011) Abeer A Khalaf et al.   BMC PLANT BIOLOGY

Mechanism of anchoring of OmpA protein to the cell wall peptidoglycan of the gram-negative bacterial outer membrane

(2011) Jeong Soon Park et al.   FASEB JOURNAL

The Strawberry Plant Defense Mechanism: A Molecular Review

(2011) Francisco Amil-Ruiz et al.   PLANT AND CELL PHYSIOLOGY

Glutathione Deficiency of the Arabidopsis Mutant pad2-1 Affects Oxidative Stress-Related Events, Defense Gene Expression, and the Hypersensitive Response

(2011) C. Dubreuil-Maurizi et al.   PLANT PHYSIOLOGY

Structure and Regulation of the Type VI Secretion System

(2010) Julie M. Silverman et al.   Annual Review of Microbiology

Metabolic profiling of strawberry (Fragaria×ananassa Duch.) during fruit development and maturation

(2010) Juanjuan Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Metabolomics for plant stress response

(2010) Vladimir Shulaev et al.   PHYSIOLOGIA PLANTARUM

Characterization of the two-protein complex in Escherichia coli responsible for lipopolysaccharide assembly at the outer membrane

(2010) S.-S. Chng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Auxin and Plant-Microbe Interactions

(2010) S. Spaepen et al.   Cold Spring Harbor Perspectives in Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Leucine-rich Repeats of Bacterial Surface Proteins Serve as Common Pattern Recognition Motifs of Human Scavenger Receptor gp340

(2009) Vuokko Loimaranta et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Primary Metabolism and Plant Defense—Fuel for the Fire

(2009) Melvin D. Bolton   MOLECULAR PLANT-MICROBE INTERACTIONS

Type IV Pili Are Required for Virulence, Twitching Motility, and Biofilm Formation ofAcidovorax avenaesubsp.citrulli

(2009) Ofir Bahar et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Contribution of glutamine synthetase to the virulence of Streptococcus suis serotype 2

(2009) Youhui Si et al.   VETERINARY MICROBIOLOGY

Functional analysis of pilQ gene in Xanthomanas oryzae pv. oryzae, bacterial blight pathogen of rice

(2008) Seon-Hwa Lim et al.   JOURNAL OF MICROBIOLOGY

Differential fruit gene expression in two strawberry cultivars in response to elevated CO2 during storage revealed by a heterologous fruit microarray approach

(2008) Monica Ponce-Valadez et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY