Global landscape of phenazine biosynthesis and biodegradation reveals species-specific colonization patterns in agricultural soils and crop microbiomes

Keystone metabolites of crop rhizosphere microbiomes

(2020) Kurt M. Dahlstrom et al.   CURRENT BIOLOGY

Root Exudation of Primary Metabolites: Mechanisms and Their Roles in Plant Responses to Environmental Stimuli

(2019) Alberto Canarini et al.   Frontiers in Plant Science

The transcription factors ActR and SoxR differentially affect the phenazine tolerance of Agrobacterium tumefaciens

(2019) Elena K. Perry et al.   MOLECULAR MICROBIOLOGY

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Functional and Structural Analysis of Phenazine O-Methyltransferase LaPhzM from Lysobacter antibioticus OH13 and One-Pot Enzymatic Synthesis of the Antibiotic Myxin

(2018) Jiasong Jiang et al.   ACS Chemical Biology

Phenazine-1-carboxylic acid and soil moisture influence biofilm development and turnover of rhizobacterial biomass on wheat root surfaces

(2018) Melissa K. LeTourneau et al.   ENVIRONMENTAL MICROBIOLOGY

PhdA Catalyzes the First Step of Phenazine-1-Carboxylic Acid Degradation in Mycobacterium fortuitum

(2018) Kyle C. Costa et al.   JOURNAL OF BACTERIOLOGY

Long-Term Irrigation Affects the Dynamics and Activity of the Wheat Rhizosphere Microbiome

(2018) Dmitri V. Mavrodi et al.   Frontiers in Plant Science

Phenazines in plant-beneficial Pseudomonas spp.: Biosynthesis, regulation, function and genomics

(2018) Adrien Biessy et al.   ENVIRONMENTAL MICROBIOLOGY

Both toxic and beneficial effects of pyocyanin contribute to the lifecycle of Pseudomonas aeruginosa

(2018) Lucas A. Meirelles et al.   MOLECULAR MICROBIOLOGY

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

Wheat microbiome bacteria can reduce virulence of a plant pathogenic fungus by altering histone acetylation

(2018) Yun Chen et al.   Nature Communications

Diversity of phytobeneficial traits revealed by whole-genome analysis of worldwide-isolated phenazine-producing Pseudomonas spp.

(2018) Adrien Biessy et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic features of bacterial adaptation to plants

(2017) Asaf Levy et al.   NATURE GENETICS

Simplified and representative bacterial community of maize roots

(2017) Ben Niu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plenty Is No Plague: Streptomyces Symbiosis with Crops

(2017) Thomas Rey et al.   TRENDS IN PLANT SCIENCE

Heterocyclic Aromatic N-Oxidation in the Biosynthesis of Phenazine Antibiotics from Lysobacter antibioticus

(2016) Yangyang Zhao et al.   ORGANIC LETTERS

Pyocyanin degradation by a tautomerizing demethylase inhibits Pseudomonas aeruginosa biofilms

(2016) Kyle C. Costa et al.   SCIENCE

Electrochemical detection ofPseudomonasin wound exudate samples from patients with chronic wounds

(2016) Hunter J. Sismaet et al.   WOUND REPAIR AND REGENERATION

Exposing the Three-Dimensional Biogeography and Metabolic States of Pathogens in Cystic Fibrosis Sputum via Hydrogel Embedding, Clearing, and rRNA Labeling

(2016) William H. DePas et al.   mBio

Increasing aridity reduces soil microbial diversity and abundance in global drylands

(2015) Fernando T. Maestre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

(2015) Michalis Hadjithomas et al.   mBio

Enzymatic Degradation of Phenazines Can Generate Energy and Protect Sensitive Organisms from Toxicity

(2015) Kyle C. Costa et al.   mBio

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED

(2015) James Kaminski et al.   PLoS Computational Biology

MUSiCC: a marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome

(2015) Ohad Manor et al.   GENOME BIOLOGY

Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability

(2014) Harry M. T. Choi et al.   ACS Nano

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Phenazine redox cycling enhances anaerobic survival inPseudomonas aeruginosaby facilitating generation of ATP and a proton-motive force

(2014) Nathaniel R. Glasser et al.   MOLECULAR MICROBIOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Bacterial Community Morphogenesis Is Intimately Linked to the Intracellular Redox State

(2013) L. E. P. Dietrich et al.   JOURNAL OF BACTERIOLOGY

Iodinin (1,6-Dihydroxyphenazine 5,10-Dioxide) from Streptosporangium sp. Induces Apoptosis Selectively in Myeloid Leukemia Cell Lines and Patient Cells

(2013) Lene Myhren et al.   Marine Drugs

The rhizosphere revisited: root microbiomics

(2013) Peter A. H. M. Bakker et al.   Frontiers in Plant Science

Recent insights into the diversity, frequency and ecological roles of phenazines in fluorescentPseudomonasspp.

(2012) Dmitri V. Mavrodi et al.   ENVIRONMENTAL MICROBIOLOGY

Population Structure and Diversity of Phenazine-1-Carboxylic Acid Producing Fluorescent Pseudomonas spp. from Dryland Cereal Fields of Central Washington State (USA)

(2012) James A. Parejko et al.   MICROBIAL ECOLOGY

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Accumulation of the Antibiotic Phenazine-1-Carboxylic Acid in the Rhizosphere of Dryland Cereals

(2011) Dmitri V. Mavrodi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DNA Strand Cleavage by the Phenazine Di-N-oxide Natural Product Myxin under Both Aerobic and Anaerobic Conditions

(2011) Goutam Chowdhury et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Phenazine-1-Carboxylic Acid Promotes Bacterial Biofilm Development via Ferrous Iron Acquisition

(2011) Y. Wang et al.   JOURNAL OF BACTERIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Diversity and Evolution of the Phenazine Biosynthesis Pathway

(2009) D. V. Mavrodi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The story of phosphorus: Global food security and food for thought

(2009) Dana Cordell et al.   GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS

Endogenous Phenazine Antibiotics Promote Anaerobic Survival of Pseudomonas aeruginosa via Extracellular Electron Transfer

(2009) Y. Wang et al.   JOURNAL OF BACTERIOLOGY

Aromatic Prenylation in Phenazine Biosynthesis

(2009) Orwah Saleh et al.   JOURNAL OF BIOLOGICAL CHEMISTRY