Diversity of phytobeneficial traits revealed by whole-genome analysis of worldwide-isolated phenazine-producing Pseudomonas spp.

Genome-based evolutionary history of Pseudomonas spp

(2018) Cedar Hesse et al.   ENVIRONMENTAL MICROBIOLOGY

Phenazine-1-carboxylic acid and soil moisture influence biofilm development and turnover of rhizobacterial biomass on wheat root surfaces

(2018) Melissa K. LeTourneau et al.   ENVIRONMENTAL MICROBIOLOGY

Hitting with a BAM: Selective Killing by Lectin-Like Bacteriocins

(2018) Maarten G. K. Ghequire et al.   mBio

A type VI secretion system effector delivery mechanism dependent on PAAR and a chaperone–co-chaperone complex

(2018) Brianne J. Burkinshaw et al.   Nature Microbiology

Type VI secretion systems in plant-associated bacteria

(2017) Patricia Bernal et al.   ENVIRONMENTAL MICROBIOLOGY

The Pseudomonas putida T6SS is a plant warden against phytopathogens

(2017) Patricia Bernal et al.   ISME Journal

antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification

(2017) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Sensitivity of Rhizoctonia Isolates to Phenazine-1-Carboxylic Acid and Biological Control by Phenazine-Producing Pseudomonas spp.

(2017) Ahmad Kamil Mohd Jaaffar et al.   PHYTOPATHOLOGY

Adaptor Proteins of Type VI Secretion System Effectors

(2017) Daniel Unterweger et al.   TRENDS IN MICROBIOLOGY

A Natural Chimeric Pseudomonas Bacteriocin with Novel Pore-Forming Activity Parasitizes the Ferrichrome Transporter

(2017) Maarten G. K. Ghequire et al.   mBio

In-silico Taxonomic Classification of 373 Genomes Reveals Species Misidentification and New Genospecies within the Genus Pseudomonas

(2017) Phuong N. Tran et al.   Frontiers in Microbiology

The Sinorhizobium (Ensifer) fredii HH103 Nodulation Outer Protein NopI Is a Determinant for Efficient Nodulation of Soybean and Cowpea Plants

(2016) Irene Jiménez-Guerrero et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Insect pathogenicity in plant-beneficial pseudomonads: phylogenetic distribution and comparative genomics

(2016) Pascale Flury et al.   ISME Journal

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pseudomonas fluorescens C7R12 type III secretion system impacts mycorrhization of Medicago truncatula and associated microbial communities

(2016) Amandine Viollet et al.   MYCORRHIZA

EDGAR 2.0: an enhanced software platform for comparative gene content analyses

(2016) Jochen Blom et al.   NUCLEIC ACIDS RESEARCH

InterPro in 2017—beyond protein family and domain annotations

(2016) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Effector-Triggered Immunity Determines Host Genotype-Specific Incompatibility in Legume–RhizobiumSymbiosis

(2016) Michiko Yasuda et al.   PLANT AND CELL PHYSIOLOGY

VgrG C terminus confers the type VI effector transport specificity and is required for binding with PAAR and adaptor–effector complex

(2016) Devanand D. Bondage et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Aim, Load, Fire: The Type VI Secretion System, a Bacterial Nanoweapon

(2016) Francesca R. Cianfanelli et al.   TRENDS IN MICROBIOLOGY

VgrG and PAAR Proteins Define Distinct Versions of a Functional Type VI Secretion System

(2016) Francesca R. Cianfanelli et al.   PLoS Pathogens

Impact of a Bacterial Volatile 2,3-Butanediol on Bacillus subtilis Rhizosphere Robustness

(2016) Hwe-Su Yi et al.   Frontiers in Microbiology

Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex

(2016) Daniel Garrido-Sanz et al.   PLoS One

Involvement of type VI secretion system in secretion of iron chelator pyoverdine in Pseudomonas taiwanensis

(2016) Wen-Jen Chen et al.   Scientific Reports

Evolutionary patchwork of an insecticidal toxin shared between plant-associated pseudomonads and the insect pathogens Photorhabdus and Xenorhabdus

(2015) Beat Ruffner et al.   BMC GENOMICS

An Interbacterial NAD(P)+ Glycohydrolase Toxin Requires Elongation Factor Tu for Delivery to Target Cells

(2015) John C. Whitney et al.   CELL

Chimeric adaptor proteins translocate diverse type VI secretion system effectors in Vibrio cholerae

(2015) D. Unterweger et al.   EMBO JOURNAL

Intraspecies Competition in Serratia marcescens Is Mediated by Type VI-Secreted Rhs Effectors and a Conserved Effector-Associated Accessory Protein

(2015) Juliana Alcoforado Diniz et al.   JOURNAL OF BACTERIOLOGY

The Sinorhizobium (Ensifer) fredii HH103 Type 3 Secretion System Suppresses Early Defense Responses to Effectively Nodulate Soybean

(2015) Irene Jiménez-Guerrero et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Enhanced annotations and features for comparing thousands ofPseudomonasgenomes in the Pseudomonas genome database

(2015) Geoffrey L. Winsor et al.   NUCLEIC ACIDS RESEARCH

Identification of divergent type VI secretion effectors using a conserved chaperone domain

(2015) Xiaoye Liang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interplay between orfamides, sessilins and phenazines in the control of Rhizoctonia diseases byPseudomonassp. CMR12a

(2015) Feyisara Eyiwumi Olorunleke et al.   Environmental Microbiology Reports

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

(2015) Thomas Brettin et al.   Scientific Reports

Bacterial Type III Secretion Systems: Specialized Nanomachines for Protein Delivery into Target Cells

(2014) Jorge E. Galán et al.   Annual Review of Microbiology

To settle or to move? The interplay between two classes of cyclic lipopeptides in the biocontrol strainPseudomonas CMR12a

(2014) Jolien D'aes et al.   ENVIRONMENTAL MICROBIOLOGY

Pseudomonas yamanorum sp. nov., a psychrotolerant bacterium isolated from a subantarctic environment

(2014) V. G. Arnau et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The VgrG Proteins Are “à la Carte” Delivery Systems for Bacterial Type VI Effectors

(2014) Abderrahman Hachani et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Type VI Secretion System Is Involved in Pseudomonas fluorescens Bacterial Competition

(2014) Victorien Decoin et al.   PLoS One

Prevalence of type III secretion system in effective biocontrol pseudomonads

(2014) Juliana Almario et al.   RESEARCH IN MICROBIOLOGY

Antimicrobial properties of Pseudomonas strains producing the antibiotic mupirocin

(2014) Sandra Matthijs et al.   RESEARCH IN MICROBIOLOGY

Taxonomy and Distribution of Phenazine-Producing Pseudomonas spp. in the Dryland Agroecosystem of the Inland Pacific Northwest, United States

(2013) James A. Parejko et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diverse type VI secretion phospholipases are functionally plastic antibacterial effectors

(2013) Alistair B. Russell et al.   NATURE

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Genomic analysis of the biocontrol strainPseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots

(2013) Muriel Marchi et al.   Environmental Microbiology Reports

Characterization of the SPI-1 and Rsp type three secretion systems inPseudomonas fluorescens F113

(2013) Matthieu Barret et al.   Environmental Microbiology Reports

Activity, distribution and function of indole-3-acetic acid biosynthetic pathways in bacteria

(2012) Cheryl L. Patten et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Genome Sequence of the Biocontrol Strain Pseudomonas fluorescens F113

(2012) M. Redondo-Nieto et al.   JOURNAL OF BACTERIOLOGY

Population Structure and Diversity of Phenazine-1-Carboxylic Acid Producing Fluorescent Pseudomonas spp. from Dryland Cereal Fields of Central Washington State (USA)

(2012) James A. Parejko et al.   MICROBIAL ECOLOGY

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

(2012) Joyce E. Loper et al.   PLoS Genetics

Production of Indole-3-Acetic Acid via the Indole-3-Acetamide Pathway in the Plant-Beneficial Bacterium Pseudomonas chlororaphis O6 Is Inhibited by ZnO Nanoparticles but Enhanced by CuO Nanoparticles

(2011) Christian O. Dimkpa et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Accumulation of the Antibiotic Phenazine-1-Carboxylic Acid in the Rhizosphere of Dryland Cereals

(2011) Dmitri V. Mavrodi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative genomics of the type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins

(2011) Pieter De Maayer et al.   BMC GENOMICS

Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered

(2011) M. Barret et al.   MICROBIOLOGY-SGM

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

Biological Control of Rhizoctonia Root Rot on Bean by Phenazine- and Cyclic Lipopeptide-ProducingPseudomonasCMR12a

(2011) Jolien D'aes et al.   PHYTOPATHOLOGY

Structural and Functional Analysis of the Type III Secretion System from Pseudomonas fluorescens Q8r1-96

(2010) D. V. Mavrodi et al.   JOURNAL OF BACTERIOLOGY

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Pseudomonas fluorescens BBc6R8 type III secretion mutants no longer promote ectomycorrhizal symbiosis

(2010) Angela M. Cusano et al.   Environmental Microbiology Reports

Evolutionary History of the phl Gene Cluster in the Plant-Associated Bacterium Pseudomonas fluorescens

(2009) J. A. Moynihan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and Evolution of the Phenazine Biosynthesis Pathway

(2009) D. V. Mavrodi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

EDGAR: A software framework for the comparative analysis of prokaryotic genomes

(2009) Jochen Blom et al.   BMC BIOINFORMATICS

Phenazine antibiotics produced by fluorescent pseudomonads contribute to natural soil suppressiveness to Fusarium wilt

(2009) Sylvie Mazurier et al.   ISME Journal

Endogenous Phenazine Antibiotics Promote Anaerobic Survival of Pseudomonas aeruginosa via Extracellular Electron Transfer

(2009) Y. Wang et al.   JOURNAL OF BACTERIOLOGY

Lines of Evidence for Horizontal Gene Transfer of a Phenazine Producing Operon into Multiple Bacterial Species

(2009) David A. Fitzpatrick   JOURNAL OF MOLECULAR EVOLUTION

Genomics of secondary metabolite production by Pseudomonas spp.

(2009) Harald Gross et al.   NATURAL PRODUCT REPORTS

Symbiotic use of pathogenic strategies: rhizobial protein secretion systems

(2009) William J. Deakin et al.   NATURE REVIEWS MICROBIOLOGY

Biosurfactants in plant-Pseudomonas interactions and their importance to biocontrol

(2009) Jolien D'aes et al.   Environmental Microbiology Reports

Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens

(2009) Mark W Silby et al.   GENOME BIOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Redox Reactions of Phenazine Antibiotics with Ferric (Hydr)oxides and Molecular Oxygen

(2008) Yun Wang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Altering the Ratio of Phenazines in Pseudomonas chlororaphis (aureofaciens) Strain 30-84: Effects on Biofilm Formation and Pathogen Inhibition

(2008) V. S. R. K. Maddula et al.   JOURNAL OF BACTERIOLOGY

The Population Genetics of dN/dS

(2008) Sergey Kryazhimskiy et al.   PLoS Genetics