Satellite DNA-like repeats are dispersed throughout the genome of the Pacific oyster Crassostrea gigas carried by Helentron non-autonomous mobile elements

Dynamic Evolution of Euchromatic Satellites on the X Chromosome in Drosophila melanogaster and the simulans Clade

(2020) John S Sproul et al.   MOLECULAR BIOLOGY AND EVOLUTION

Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

(2019) Pavel Neumann et al.   Mobile DNA

Characterization of repeat arrays in ultra‐long nanopore reads reveals frequent origin of satellite DNA from retrotransposon‐derived tandem repeats

(2019) Tihana Vondrak et al.   PLANT JOURNAL

Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases

(2019) Ole K Tørresen et al.   NUCLEIC ACIDS RESEARCH

Nanopore Sequencing and De Novo Assembly of a Black-Shelled Pacific Oyster (Crassostrea gigas) Genome

(2019) Xiaotong Wang et al.   Frontiers in Genetics

Satellite DNA evolution: old ideas, new approaches

(2018) Sarah Sander Lower et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Double insertion of transposable elements provides a substrate for the evolution of satellite DNA

(2018) Michael P. McGurk et al.   GENOME RESEARCH

Characteristics and evolution of satellite DNA sequences in bivalve mollusks

(2018) E. Šatović et al.   European Zoological Journal

Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata

(2018) Pierre-Alexandre Gagnaire et al.   Genome Biology and Evolution

From the raw bar to the bench: Bivalves as models for human health

(2018) José A. Fernández Robledo et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Structural and sequence diversity of eukaryotic transposable elements

(2018) Kenji K. Kojima   GENES & GENETIC SYSTEMS

Single-molecule sequencing resolves the detailed structure of complex satellite DNA loci inDrosophila melanogaster

(2017) Daniel E. Khost et al.   GENOME RESEARCH

Satellite DNA: An Evolving Topic

(2017) Manuel Garrido-Ramos   Genes

Adjacent sequences disclose potential for intra-genomic dispersal of satellite DNA repeats and suggest a complex network with transposable elements

(2016) Eva Satović et al.   BMC GENOMICS

Rolling-circle amplification of centromericHelitronsin plant genomes

(2016) Wenwei Xiong et al.   PLANT JOURNAL

A Helitron transposon reconstructed from bats reveals a novel mechanism of genome shuffling in eukaryotes

(2016) Ivana Grabundzija et al.   Nature Communications

High-throughput analysis of the satellitome illuminates satellite DNA evolution

(2016) Francisco J. Ruiz-Ruano et al.   Scientific Reports

Helitrons shaping the genomic architecture of Drosophila: enrichment of DINE-TR1 in α- and β-heterochromatin, satellite DNA emergence, and piRNA expression

(2015) Guilherme B. Dias et al.   CHROMOSOME RESEARCH

Structural and functional liaisons between transposable elements and satellite DNAs

(2015) Nevenka Meštrović et al.   CHROMOSOME RESEARCH

The puzzling character of repetitive DNA in Phodopus genomes (Cricetidae, Rodentia)

(2015) Ana Paço et al.   CHROMOSOME RESEARCH

Repetitive DNA in eukaryotic genomes

(2015) Maria Assunta Biscotti et al.   CHROMOSOME RESEARCH

Genome-wide analysis of tandem repeats inTribolium castaneumgenome reveals abundant and highly dynamic tandem repeat families with satellite DNA features in euchromatic chromosomal arms

(2015) Martina Pavlek et al.   DNA RESEARCH

HERV-K(HML-2) rec and np9 transcripts not restricted to disease but present in many normal human tissues

(2015) Katja Schmitt et al.   Mobile DNA

Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation

(2015) Xiaotong Wang et al.   BMC GENOMICS

Rolling-Circle Transposons Catalyze Genomic Innovation in a Mammalian Lineage

(2014) Jainy Thomas et al.   Genome Biology and Evolution

Tetris Is a Foldback Transposon that Provided the Building Blocks for an Emerging Satellite DNA of Drosophila virilis

(2014) Guilherme B. Dias et al.   Genome Biology and Evolution

Insights on genome size evolution from a miniature inverted repeat transposon driving a satellite DNA

(2014) Thibault Scalvenzi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

DINE-1, the highest copy number repeats in Drosophila melanogaster are non-autonomous endonuclease-encoding rolling-circle transposable elements (Helentrons)

(2014) Jainy Thomas et al.   Mobile DNA

Tandem repeats derived from centromeric retrotransposons

(2013) Anupma Sharma et al.   BMC GENOMICS

Tandem Repeat-Containing MITEs in the Clam Donax trunculus

(2013) Eva Šatović et al.   Genome Biology and Evolution

The roles of the monomer length and nucleotide context of plant tandem repeats in nucleosome positioning

(2013) Victor G. Levitsky et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Conserved DNA Motifs, Including the CENP-B Box-like, Are Possible Promoters of Satellite DNA Array Rearrangements in Nematodes

(2013) Nevenka Meštrović et al.   PLoS One

Nucleosomes and centromeric DNA packaging

(2013) J. S. Heslop-Harrison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

The first identification of molluscan Ecsit in the Pacific oyster, Crassostrea gigas, and its expression against bacterial challenge

(2011) Linlin Zhang et al.   AQUACULTURE RESEARCH

Mobilizing the Genome of Lepidoptera through Novel Sequence Gains and End Creation by Non-autonomous Lep1 Helitrons

(2011) B. S. Coates et al.   DNA RESEARCH

The 1.688 Repetitive DNA of Drosophila: Concerted Evolution at Different Genomic Scales and Association with Genes

(2011) Gustavo C. S. Kuhn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization and Genomic Organization of PERI, a Repetitive DNA in the Drosophila buzzatii Cluster Related to DINE-1 Transposable Elements and Highly Abundant in the Sex Chromosomes

(2010) G.C.S. Kuhn et al.   CYTOGENETIC AND GENOME RESEARCH

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Hypervariable 3′ UTR region of plant LTR-retrotransposons as a source of novel satellite repeats

(2009) Jiří Macas et al.   GENE

Evolutionary dynamics and sites of illegitimate recombination revealed in the interspersion and sequence junctions of two nonhomologous satellite DNAs in cactophilic Drosophila species

(2009) G C S Kuhn et al.   HEREDITY

Bindin genes of the Pacific oyster Crassostrea gigas

(2008) Gary W. Moy et al.   GENE

Chromosomal organization of simple sequence repeats in the Pacific oyster (Crassostrea gigas): (GGAT)4, (GT)7 and (TA)10 chromosome patterns

(2008) K. Bouilly et al.   JOURNAL OF GENETICS

Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes

(2008) Hsiao-Pei Yang et al.   GENOME BIOLOGY

Analysis of repetitive DNA distribution patterns in the Tribolium castaneum genome

(2008) Suzhi Wang et al.   GENOME BIOLOGY