Rolling-Circle Transposons Catalyze Genomic Innovation in a Mammalian Lineage

Large Numbers of Novel miRNAs Originate from DNA Transposons and Are Coincident with a Large Species Radiation in Bats

(2014) Roy N. Platt et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dietary and Flight Energetic Adaptations in a Salivary Gland Transcriptome of an Insectivorous Bat

(2014) Carleton J. Phillips et al.   PLoS One

DINE-1, the highest copy number repeats in Drosophila melanogaster are non-autonomous endonuclease-encoding rolling-circle transposable elements (Helentrons)

(2014) Jainy Thomas et al.   Mobile DNA

Identification and Evolution of the Silkworm Helitrons and their Contribution to Transcripts

(2013) M.-J. Han et al.   DNA RESEARCH

Human and Viral Golgi Anti-apoptotic Proteins (GAAPs) Oligomerize via Different Mechanisms and Monomeric GAAP Inhibits Apoptosis and Modulates Calcium

(2013) Nuno Saraiva et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genome-Wide Characterization of Endogenous Retroviruses in the Bat Myotis lucifugus Reveals Recent and Diverse Infections

(2013) X. Zhuo et al.   JOURNAL OF VIROLOGY

Predicting long non-coding RNAs using RNA sequencing

(2013) Nicholas E. Ilott et al.   METHODS

Contrasting Evolutionary Dynamics of the Developmental Regulator PAX9, among Bats, with Evidence for a Novel Post-Transcriptional Regulatory Mechanism

(2013) Caleb D. Phillips et al.   PLoS One

Rates and patterns of great ape retrotransposition

(2013) F. Hormozdiari et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome analysis reveals insights into physiology and longevity of the Brandt’s bat Myotis brandtii

(2013) Inge Seim et al.   Nature Communications

Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs

(2013) Aurélie Kapusta et al.   PLoS Genetics

Active Transposition in Genomes

(2012) Cheng Ran Lisa Huang et al.   Annual Review of Genetics

Transposable Elements: An Abundant and Natural Source of Regulatory Sequences for Host Genes

(2012) Rita Rebollo et al.   Annual Review of Genetics

Survey Sequencing Reveals Elevated DNA Transposon Activity, Novel Elements, and Variation in Repetitive Landscapes among Vesper Bats

(2012) H. J. T. Pagan et al.   Genome Biology and Evolution

Proto-genes and de novo gene birth

(2012) Anne-Ruxandra Carvunis et al.   NATURE

Comparative studies of gene expression and the evolution of gene regulation

(2012) Irene Gallego Romero et al.   NATURE REVIEWS GENETICS

Integrative annotation of chromatin elements from ENCODE data

(2012) Michael M. Hoffman et al.   NUCLEIC ACIDS RESEARCH

Expansion and Evolution of the X-Linked Testis Specific Multigene Families in the melanogaster Species Subgroup

(2012) Galina L. Kogan et al.   PLoS One

Genetic Diversity of Neotropical Myotis (Chiroptera: Vespertilionidae) with an Emphasis on South American Species

(2012) Roxanne J. Larsen et al.   PLoS One

Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon

(2012) R. Mitra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Analysis of Bat Genomes Provides Insight into the Evolution of Flight and Immunity

(2012) G. Zhang et al.   SCIENCE

Transposable Elements, Epigenetics, and Genome Evolution

(2012) N. V. Fedoroff   SCIENCE

Transposable elements reveal a stem cell-specific class of long noncoding RNAs

(2012) David Kelley et al.   GENOME BIOLOGY

Structural characterization of helitrons and their stepwise capturing of gene fragments in the maize genome

(2011) Yongbin Dong et al.   BMC GENOMICS

WT1 Mutants Reveal SRPK1 to Be a Downstream Angiogenesis Target by Altering VEGF Splicing

(2011) Elianna M. Amin et al.   CANCER CELL

Mobilizing the Genome of Lepidoptera through Novel Sequence Gains and End Creation by Non-autonomous Lep1 Helitrons

(2011) B. S. Coates et al.   DNA RESEARCH

Gene Capture by Helitron Transposons Reshuffles the Transcriptome of Maize

(2011) A. M. Barbaglia et al.   GENETICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The genes underlying the process of speciation

(2011) Patrik Nosil et al.   TRENDS IN ECOLOGY & EVOLUTION

Serine-arginine protein kinases: a small protein kinase family with a large cellular presence

(2010) Thomas Giannakouros et al.   FEBS Journal

Jumping genes and epigenetics: Towards new species

(2010) Rita Rebollo et al.   GENE

The limited distribution of Helitrons to vesper bats supports horizontal transfer

(2010) Jainy Thomas et al.   GENE

PiggyBac-ing on a Primate Genome: Novel Elements, Recent Activity and Horizontal Transfer

(2010) Heidi J. T. Pagan et al.   Genome Biology and Evolution

Pervasive Horizontal Transfer of Rolling-Circle Transposons among Animals

(2010) Jainy Thomas et al.   Genome Biology and Evolution

Origins, evolution, and phenotypic impact of new genes

(2010) H. Kaessmann   GENOME RESEARCH

Patching gaps in plant genomes results in gene movement and erosion of colinearity

(2010) T. Wicker et al.   GENOME RESEARCH

Identifying the confounding factors in resolving phylogenetic relationships in Vespertilionidae

(2010) Justin B. Lack et al.   JOURNAL OF MAMMALOGY

A role for host–parasite interactions in the horizontal transfer of transposons across phyla

(2010) Clément Gilbert et al.   NATURE

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Speciation genetics: current status and evolving approaches

(2010) J. B. W. Wolf et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bs1, a New Chimeric Gene Formed by Retrotransposon-Mediated Exon Shuffling in Maize

(2010) N. Elrouby et al.   PLANT PHYSIOLOGY

Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution

(2010) Sarah Schaack et al.   TRENDS IN ECOLOGY & EVOLUTION

A Young Drosophila Duplicate Gene Plays Essential Roles in Spermatogenesis by Regulating Several Y-Linked Male Fertility Genes

(2010) Yun Ding et al.   PLoS Genetics

Transposable elements: powerful facilitators of evolution

(2009) Keith R. Oliver et al.   BIOESSAYS

Transposable elements and an epigenetic basis for punctuated equilibria

(2009) David W. Zeh et al.   BIOESSAYS

Fragments of the key flowering gene GIGANTEA are associated with helitron-type sequences in the Pooideae grass Lolium perenne

(2009) Tim Langdon et al.   BMC PLANT BIOLOGY

Transposable elements in gene regulation and in the evolution of vertebrate genomes

(2009) Guillaume Bourque   CURRENT OPINION IN GENETICS & DEVELOPMENT

Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes

(2009) Cédric Feschotte et al.   Genome Biology and Evolution

Exon-trapping mediated by the human retrotransposon SVA

(2009) D. C. Hancks et al.   GENOME RESEARCH

5'-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

(2009) A. Damert et al.   GENOME RESEARCH

Transposable Elements and Factors Influencing their Success in Eukaryotes

(2009) E. J. Pritham   JOURNAL OF HEREDITY

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs

(2009) Giorgio Grillo et al.   NUCLEIC ACIDS RESEARCH

The Functional Role of Pack-MULEs in Rice Inferred from Purifying Selection and Expression Profile

(2009) K. Hanada et al.   PLANT CELL

A cornucopia of Helitrons shapes the maize genome

(2009) C. Feschotte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure-based discovery and description of plant and animal Helitrons

(2009) L. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distribution, diversity, evolution, and survival of Helitrons in the maize genome

(2009) L. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The polychromatic Helitron landscape of the maize genome

(2009) C. Du et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Function and regulation of the mammalian Musashi mRNA translational regulator

(2008) Angus M. MacNicol et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Transduplication resulted in the incorporation of two protein-coding sequences into the Turmoil-1 transposable element of C. elegans

(2008) Noa Sela et al.   Biology Direct

Computational prediction and molecular confirmation of Helitron transposons in the maize genome

(2008) Chunguang Du et al.   BMC GENOMICS

A comparative computational analysis of nonautonomous Helitron elements between maize and rice

(2008) Michael Sweredoski et al.   BMC GENOMICS

Transposable elements as drivers of genomic and biological diversity in vertebrates

(2008) Astrid Böhne et al.   CHROMOSOME RESEARCH

Formation and Longevity of Chimeric and Duplicate Genes in Drosophila melanogaster

(2008) R. L. Rogers et al.   GENETICS

Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus

(2008) D. A. Ray et al.   GENOME RESEARCH

The Subtelomere of Oryza sativa Chromosome 3 Short Arm as a Hot Bed of New Gene Origination in Rice

(2008) Chuanzhu Fan et al.   Molecular Plant

Transposable elements and the evolution of regulatory networks

(2008) Cédric Feschotte   NATURE REVIEWS GENETICS

RNA-based gene duplication: mechanistic and evolutionary insights

(2008) Henrik Kaessmann et al.   NATURE REVIEWS GENETICS

Helitron mediated amplification of cytochrome P450 monooxygenase gene in maize

(2008) Natalie Jameson et al.   PLANT MOLECULAR BIOLOGY

Helitrons: Enigmatic abductors and mobilizers of host genome sequences

(2008) Shailesh Lal et al.   PLANT SCIENCE

Repetitive Element-Mediated Recombination as a Mechanism for New Gene Origination in Drosophila

(2008) Shuang Yang et al.   PLoS Genetics

Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods

(2008) J. K. Pace et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Retrotransposon-Mediated Gene Duplication Underlies Morphological Variation of Tomato Fruit

(2008) H. Xiao et al.   SCIENCE