The roles of the monomer length and nucleotide context of plant tandem repeats in nucleosome positioning

Structure-based Analysis of DNA Sequence Patterns Guiding Nucleosome Positioningin vitro

(2014) Feng Cui et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

The DNA Sequence-dependence of Nucleosome Positioningin vivoandin vitro

(2014) Andrew Travers et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Sequence Structure of Hidden 10.4-base Repeat in the Nucleosomes ofC. elegans

(2012) F. Salih et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Nucleosome DNA Bendability Matrix(C. elegans)

(2012) I. Gabdank et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

The Molecular Evolution of Nucleosome Positioning Through Sequence-Dependent Deformation of the DNA Polymer

(2012) G. A. Babbitt et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Analysis of nucleosome positioning determined by DNA helix curvature in the human genome

(2011) Hongde Liu et al.   BMC GENOMICS

High-Resolution Genome-wide Mapping of the Primary Structure of Chromatin

(2011) Zhenhai Zhang et al.   CELL

Widespread signatures of recent selection linked to nucleosome positioning in the human lineage

(2011) J. G. D. Prendergast et al.   GENOME RESEARCH

Variety of genomic DNA patterns for nucleosome positioning

(2011) I. Ioshikhes et al.   GENOME RESEARCH

From nucleosome to chromosome: a dynamic organization of genetic information

(2011) Paul Fransz et al.   PLANT JOURNAL

Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes

(2009) M. Y. Tolstorukov et al.   GENOME RESEARCH

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

(2009) Yong Zhang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Using DNA mechanics to predict in vitro nucleosome positions and formation energies

(2009) Alexandre V. Morozov et al.   NUCLEIC ACIDS RESEARCH

Repertoires of the Nucleosome-Positioning Dinucleotides

(2009) Thomas Bettecken et al.   PLoS One

What controls nucleosome positions?

(2009) Eran Segal et al.   TRENDS IN GENETICS

uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts

(2008) Minghui Jiang et al.   BMC BIOINFORMATICS

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

(2008) A. Valouev et al.   GENOME RESEARCH

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

(2008) T. N. Mavrich et al.   GENOME RESEARCH

The DNA-encoded nucleosome organization of a eukaryotic genome

(2008) Noam Kaplan et al.   NATURE

DNA physical properties determine nucleosome occupancy from yeast to fly

(2008) Vincent Miele et al.   NUCLEIC ACIDS RESEARCH

Genomic Sequence Is Highly Predictive of Local Nucleosome Depletion

(2008) Guo-Cheng Yuan et al.   PLoS Computational Biology

Predicting Human Nucleosome Occupancy from Primary Sequence

(2008) Shobhit Gupta et al.   PLoS Computational Biology

Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals

(2008) Yair Field et al.   PLoS Computational Biology