FlyRNAi.org—the database of the Drosophila RNAi screening center and transgenic RNAi project: 2021 update

Large-Scale Transgenic Drosophila Resource Collections for Loss- and Gain-of-Function Studies

(2020) Jonathan Zirin et al.   GENETICS

A cell atlas of the adult Drosophila midgut

(2020) Ruei-Jiun Hung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A single-cell survey of Drosophila blood

(2020) Sudhir Gopal Tattikota et al.   eLife

Alliance of Genome Resources Portal: unified model organism research platform

(2019) et al.   NUCLEIC ACIDS RESEARCH

De novo identification of essential protein domains from CRISPR-Cas9 tiling-sgRNA knockout screens

(2019) Wei He et al.   Nature Communications

An efficient CRISPR-based strategy to insert small and large fragments of DNA using short homology arms

(2019) Oguz Kanca et al.   eLife

The Alliance of Genome Resources: Building a Modern Data Ecosystem for Model Organism Databases

(2019)   GENETICS

SNP-CRISPR: A Web Tool for SNP-Specific Genome Editing

(2019) Chiao-Lin Chen et al.   G3-Genes Genomes Genetics

A gene-specific T2A-GAL4 library for Drosophila

(2018) Pei-Tseng Lee et al.   eLife

Pooled genome-wide CRISPR screening for basal and context-specific fitness gene essentiality in Drosophila cells

(2018) Raghuvir Viswanatha et al.   eLife

A Membrane Transporter Is Required for Steroid Hormone Uptake in Drosophila

(2018) Naoki Okamoto et al.   DEVELOPMENTAL CELL

The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources

(2018) Leyla Ruzicka et al.   NUCLEIC ACIDS RESEARCH

Mouse Genome Database (MGD) 2019

(2018) Carol J Bult et al.   NUCLEIC ACIDS RESEARCH

OrthoInspector 3.0: open portal for comparative genomics

(2018) Yannis Nevers et al.   NUCLEIC ACIDS RESEARCH

The BioGRID interaction database: 2019 update

(2018) Rose Oughtred et al.   NUCLEIC ACIDS RESEARCH

FlyBase 2.0: the next generation

(2018) Jim Thurmond et al.   NUCLEIC ACIDS RESEARCH

iProteinDB: An Integrative Database of Drosophila Post-translational Modifications

(2018) Yanhui Hu et al.   G3-Genes Genomes Genetics

Molecular Interaction Search Tool (MIST): an integrated resource for mining gene and protein interaction data

(2017) Yanhui Hu et al.   NUCLEIC ACIDS RESEARCH

Gene2Function: An Integrated Online Resource for Gene Function Discovery

(2017) Yanhui Hu et al.   G3-Genes Genomes Genetics

FlyRNAi.org—the database of the Drosophila RNAi screening center and transgenic RNAi project: 2017 update

(2016) Yanhui Hu et al.   NUCLEIC ACIDS RESEARCH

Controllability analysis of the directed human protein interaction network identifies disease genes and drug targets

(2016) Arunachalam Vinayagam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Integrative Analysis of the InR/PI3K/Akt Network Identifies the Dynamic Response to Insulin Signaling

(2016) Arunachalam Vinayagam et al.   Cell Reports

The Transgenic RNAi Project at Harvard Medical School: Resources and Validation

(2015) L. A. Perkins et al.   GENETICS

Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains

(2015) Junwei Shi et al.   NATURE BIOTECHNOLOGY

Proteomic mapping in liveDrosophilatissues using an engineered ascorbate peroxidase

(2015) Chiao-Lin Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of potential drug targets for tuberous sclerosis complex by synthetic screens combining CRISPR-based knockouts with RNAi

(2015) Benjamin E. Housden et al.   Science Signaling

Identification of potential drug targets for tuberous sclerosis complex by synthetic screens combining CRISPR-based knockouts with RNAi

(2015) Benjamin E. Housden et al.   Science Signaling

InterMine: extensive web services for modern biology

(2014) Alex Kalderimis et al.   NUCLEIC ACIDS RESEARCH

UP-TORR: Online Tool for Accurate and Up-to-Date Annotation of RNAi Reagents

(2013) Y. Hu et al.   GENETICS

Integrating protein-protein interaction networks with phenotypes reveals signs of interactions

(2013) Arunachalam Vinayagam et al.   NATURE METHODS

Optimized gene editing technology for Drosophila melanogaster using germ line-specific Cas9

(2013) X. Ren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein Complex-Based Analysis Framework for High-Throughput Data Sets

(2013) A. Vinayagam et al.   Science Signaling

FlyPrimerBank: An Online Database for Drosophila melanogaster Gene Expression Analysis and Knockdown Evaluation of RNAi Reagents

(2013) Yanhui Hu et al.   G3-Genes Genomes Genetics

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data

(2012) Richard N. Smith et al.   BIOINFORMATICS

Drosophila Cytokine Unpaired 2 Regulates Physiological Homeostasis by Remotely Controlling Insulin Secretion

(2012) Akhila Rajan et al.   CELL

An integrative approach to ortholog prediction for disease-focused and other functional studies

(2011) Yanhui Hu et al.   BMC BIOINFORMATICS

FlyRNAi.org--the database of the Drosophila RNAi screening center: 2012 update

(2011) I. T. Flockhart et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH