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Title
Aggregation and disaggregation features of the human proteome
Authors
Keywords
-
Journal
Molecular Systems Biology
Volume 16, Issue 10, Pages -
Publisher
EMBO
Online
2020-10-07
DOI
10.15252/msb.20209500
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Note: Only part of the references are listed.- Widespread remodeling of proteome solubility in response to different protein homeostasis stresses
- (2020) Xiaojing Sui et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Proteome-wide solubility and thermal stability profiling reveals distinct regulatory roles for ATP
- (2019) Sindhuja Sridharan et al. Nature Communications
- Modulation of Amyloid States by Molecular Chaperones
- (2019) Anne Wentink et al. Cold Spring Harbor Perspectives in Biology
- Nascent-protein ubiquitination is required for heat shock–induced gene downregulation in human cells
- (2019) Fernando Aprile-Garcia et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- An aggregation-prone mutant of eIF3a forms reversible assemblies escaping spatial control in exponentially growing yeast cells
- (2019) Lenka Senohrabkova et al. CURRENT GENETICS
- Advances in higher order multiplexing techniques in proteomics
- (2019) Suruchi Aggarwal et al. JOURNAL OF PROTEOME RESEARCH
- Protein aggregation mediates stoichiometry of protein complexes in aneuploid cells
- (2019) Christopher M. Brennan et al. GENES & DEVELOPMENT
- The nucleolus functions as a phase-separated protein quality control compartment
- (2019) F. Frottin et al. SCIENCE
- Biological plasticity rescues target activity in CRISPR knock outs
- (2019) Arne H. Smits et al. NATURE METHODS
- The Heat Shock Response in Yeast Maintains Protein Homeostasis by Chaperoning and Replenishing Proteins
- (2019) Moritz Mühlhofer et al. Cell Reports
- Multiplexed Proteome Dynamics Profiling Reveals Mechanisms Controlling Protein Homeostasis
- (2018) Mikhail M. Savitski et al. CELL
- Pervasive Protein Thermal Stability Variation during the Cell Cycle
- (2018) Isabelle Becher et al. CELL
- Extending the Compatibility of the SP3 Paramagnetic Bead Processing Approach for Proteomics
- (2018) Sophie Moggridge et al. JOURNAL OF PROTEOME RESEARCH
- Cellular Handling of Protein Aggregates by Disaggregation Machines
- (2018) Axel Mogk et al. MOLECULAR CELL
- Thermal proteome profiling in bacteria: probing protein state in vivo
- (2018) André Mateus et al. Molecular Systems Biology
- Protein Disaggregation in Multicellular Organisms
- (2018) Nadinath B. Nillegoda et al. TRENDS IN BIOCHEMICAL SCIENCES
- Systematic analysis of protein turnover in primary cells
- (2018) Toby Mathieson et al. Nature Communications
- Large-scale aggregation analysis of eukaryotic proteins reveals an involvement of intrinsically disordered regions in protein folding
- (2018) Eri Uemura et al. Scientific Reports
- Stress Granules and Processing Bodies in Translational Control
- (2018) Pavel Ivanov et al. Cold Spring Harbor Perspectives in Biology
- UniProt: a worldwide hub of protein knowledge
- (2018) NUCLEIC ACIDS RESEARCH
- Reversible protein aggregation is a protective mechanism to ensure cell cycle restart after stress
- (2017) Shady Saad et al. NATURE CELL BIOLOGY
- A subcellular map of the human proteome
- (2017) Peter J. Thul et al. SCIENCE
- Transcriptional response to stress is pre-wired by promoter and enhancer architecture
- (2017) Anniina Vihervaara et al. Nature Communications
- Spatiotemporal Proteomic Profiling of Huntington’s Disease Inclusions Reveals Widespread Loss of Protein Function
- (2017) Fabian Hosp et al. Cell Reports
- Kinetic Analysis of Protein Stability Reveals Age-Dependent Degradation
- (2016) Erik McShane et al. CELL
- ATPase-Modulated Stress Granules Contain a Diverse Proteome and Substructure
- (2016) Saumya Jain et al. CELL
- Components of a mammalian protein disaggregation/refolding machine are targeted to nuclear speckles following thermal stress in differentiated human neuronal cells
- (2016) Catherine A. S. Deane et al. CELL STRESS & CHAPERONES
- The epichaperome is an integrated chaperome network that facilitates tumour survival
- (2016) Anna Rodina et al. NATURE
- Thermal profiling reveals phenylalanine hydroxylase as an off-target of panobinostat
- (2016) Isabelle Becher et al. Nature Chemical Biology
- Thermal proteome profiling: unbiased assessment of protein state through heat-induced stability changes
- (2016) André Mateus et al. Proteome Science
- In vivo aspects of protein folding and quality control
- (2016) D. Balchin et al. SCIENCE
- Cell Signaling and Stress Responses
- (2016) Gökhan S. Hotamisligil et al. Cold Spring Harbor Perspectives in Biology
- A Concentration-Dependent Liquid Phase Separation Can Cause Toxicity upon Increased Protein Expression
- (2016) Benedetta Bolognesi et al. Cell Reports
- Distinct stress conditions result in aggregation of proteins with similar properties
- (2016) Alan J. Weids et al. Scientific Reports
- Reversible, Specific, Active Aggregates of Endogenous Proteins Assemble upon Heat Stress
- (2015) Edward W.J. Wallace et al. CELL
- Widespread Proteome Remodeling and Aggregation in Aging C. elegans
- (2015) Dirk M. Walther et al. CELL
- The H1 linker histones: multifunctional proteins beyond the nucleosomal core particle
- (2015) S. P. Hergeth et al. EMBO REPORTS
- Spatially Organized Aggregation of Misfolded Proteins as Cellular Stress Defense Strategy
- (2015) Stephanie B.M. Miller et al. JOURNAL OF MOLECULAR BIOLOGY
- Crucial HSP70 co-chaperone complex unlocks metazoan protein disaggregation
- (2015) Nadinath B. Nillegoda et al. NATURE
- Thermal proteome profiling monitors ligand interactions with cellular membrane proteins
- (2015) Friedrich B M Reinhard et al. NATURE METHODS
- Thermal proteome profiling for unbiased identification of direct and indirect drug targets using multiplexed quantitative mass spectrometry
- (2015) Holger Franken et al. Nature Protocols
- limma powers differential expression analyses for RNA-sequencing and microarray studies
- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
- Supersaturation is a major driving force for protein aggregation in neurodegenerative diseases
- (2015) Prajwal Ciryam et al. TRENDS IN PHARMACOLOGICAL SCIENCES
- Mechanisms of protein-folding diseases at a glance
- (2014) J. S. Valastyan et al. Disease Models & Mechanisms
- A proteomic survey of widespread protein aggregation in yeast
- (2014) Jeremy D. O'Connell et al. Molecular BioSystems
- Ultrasensitive proteome analysis using paramagnetic bead technology
- (2014) C. S. Hughes et al. Molecular Systems Biology
- The amyloid state and its association with protein misfolding diseases
- (2014) Tuomas P. J. Knowles et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The GOA database: Gene Ontology annotation updates for 2015
- (2014) Rachael P. Huntley et al. NUCLEIC ACIDS RESEARCH
- Tracking cancer drugs in living cells by thermal profiling of the proteome
- (2014) M. M. Savitski et al. SCIENCE
- Global analysis of protein aggregation in yeast during physiological conditions and arsenite stress
- (2014) S. Ibstedt et al. Biology Open
- The nascent polypeptide-associated complex is a key regulator of proteostasis
- (2013) Janine Kirstein-Miles et al. EMBO JOURNAL
- Measuring and Managing Ratio Compression for Accurate iTRAQ/TMT Quantification
- (2013) Mikhail M. Savitski et al. JOURNAL OF PROTEOME RESEARCH
- Widespread Regulation of Translation by Elongation Pausing in Heat Shock
- (2013) Reut Shalgi et al. MOLECULAR CELL
- Protein rescue from aggregates by powerful molecular chaperone machines
- (2013) Shannon M. Doyle et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Heat Shock-Induced Accumulation of Translation Elongation and Termination Factors Precedes Assembly of Stress Granules in S. cerevisiae
- (2013) Tomas Grousl et al. PLoS One
- Widespread Aggregation and Neurodegenerative Diseases Are Associated with Supersaturated Proteins
- (2013) Prajwal Ciryam et al. Cell Reports
- Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present
- (2012) Marcus Bantscheff et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- High-Resolution Enabled TMT 8-plexing
- (2012) Thilo Werner et al. ANALYTICAL CHEMISTRY
- Increasing the Multiplexing Capacity of TMTs Using Reporter Ion Isotopologues with Isobaric Masses
- (2012) Graeme C. McAlister et al. ANALYTICAL CHEMISTRY
- Toward a Molecular Understanding of Protein Solubility: Increased Negative Surface Charge Correlates with Increased Solubility
- (2012) Ryan M. Kramer et al. BIOPHYSICAL JOURNAL
- Metazoan Hsp70 machines use Hsp110 to power protein disaggregation
- (2012) Heike Rampelt et al. EMBO JOURNAL
- D2P2: database of disordered protein predictions
- (2012) Matt E. Oates et al. NUCLEIC ACIDS RESEARCH
- clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
- (2012) Guangchuang Yu et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- Hyperplexing: A Method for Higher-Order Multiplexed Quantitative Proteomics Provides a Map of the Dynamic Response to Rapamycin in Yeast
- (2012) N. Dephoure et al. Science Signaling
- Proteomic analysis of age-dependent changes in protein solubility identifies genes that modulate lifespan
- (2011) Pedro Reis-Rodrigues et al. AGING CELL
- MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation
- (2011) Laurent Gatto et al. BIOINFORMATICS
- Intrinsically disordered regions as affinity tuners in protein–DNA interactions
- (2011) Dana Vuzman et al. Molecular BioSystems
- Global quantification of mammalian gene expression control
- (2011) Björn Schwanhäusser et al. NATURE
- The Mammalian Disaggregase Machinery: Hsp110 Synergizes with Hsp70 and Hsp40 to Catalyze Protein Disaggregation and Reactivation in a Cell-Free System
- (2011) James Shorter PLoS One
- Dynamic protein–DNA recognition: beyond what can be seen
- (2011) Monika Fuxreiter et al. TRENDS IN BIOCHEMICAL SCIENCES
- Multidimensional Structure-Activity Relationship of a Protein in Its Aggregated States
- (2010) Lei Wang et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Cellular strategies for controlling protein aggregation
- (2010) Jens Tyedmers et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Widespread Protein Aggregation as an Inherent Part of Aging in C. elegans
- (2010) Della C. David et al. PLOS BIOLOGY
- Intrinsic Protein Disorder and Interaction Promiscuity Are Widely Associated with Dosage Sensitivity
- (2009) Tanya Vavouri et al. CELL
- Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation
- (2009) C. P. Brangwynne et al. SCIENCE
- fdrtool: a versatile R package for estimating local and tail area-based false discovery rates
- (2008) K. Strimmer BIOINFORMATICS
- Prediction of Aggregation-Prone Regions in Structured Proteins
- (2008) Gian Gaetano Tartaglia et al. JOURNAL OF MOLECULAR BIOLOGY
- Turnover of the Human Proteome: Determination of Protein Intracellular Stability by Dynamic SILAC
- (2008) Mary K. Doherty et al. JOURNAL OF PROTEOME RESEARCH
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