Genomic islands of divergence infer a phenotypic landscape in Pacific lamprey

Evolving Inversions

(2019) Rui Faria et al.   TRENDS IN ECOLOGY & EVOLUTION

Evidence for the genetic basis and epistatic interactions underlying ocean‐ and river‐maturing ecotypes of Pacific Lamprey ( Entosphenus tridentatus ) returning to the Klamath River, California

(2019) Keith A. Parker et al.   MOLECULAR ECOLOGY

Local and regional scale habitat heterogeneity contribute to genetic adaptation in a commercially important marine mollusc ( Haliotis rubra ) from southeastern Australia

(2019) A. D. Miller et al.   MOLECULAR ECOLOGY

Shared genomic outliers across two divergent population clusters of a highly threatened seagrass

(2019) Nikki Leanne Phair et al.   PeerJ

Marine biology of the pacific lamprey Entosphenus tridentatus

(2019) Benjamin J. Clemens et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Fine-scale population structure and ecotypes of anadromous Hilsa shad (Tenualosa ilisha) across complex aquatic ecosystems revealed by NextRAD genotyping

(2019) Md Asaduzzaman et al.   Scientific Reports

Sex-dependent dominance maintains migration supergene in rainbow trout

(2019) Devon E. Pearse et al.   Nature Ecology & Evolution

The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution

(2018) Jeramiah J. Smith et al.   NATURE GENETICS

Genomic variation underlying complex life-history traits revealed by genome sequencing in Chinook salmon

(2018) Shawn R. Narum et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Eco-Evolutionary Genomics of Chromosomal Inversions

(2018) Maren Wellenreuther et al.   TRENDS IN ECOLOGY & EVOLUTION

Selection at a genomic region of major effect is responsible for evolution of complex life histories in anadromous steelhead

(2018) Steven J. Micheletti et al.   BMC EVOLUTIONARY BIOLOGY

Life History Diversity of Snake River Steelhead Populations between and within Management Categories

(2017) Timothy Copeland et al.   NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT

The evolutionary basis of premature migration in Pacific salmon highlights the utility of genomics for informing conservation

(2017) Daniel J. Prince et al.   Science Advances

Effects of water velocity, turbulence and obstacle length on the swimming capabilities of adult Pacific lamprey

(2016) M. A. Kirk et al.   FISHERIES MANAGEMENT AND ECOLOGY

Abundance estimates and confidence intervals for the run composition of returning salmonids

(2016) Kirk Steinhorst et al.   FISHERY BULLETIN

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

(2016) Maxim V. Kuleshov et al.   NUCLEIC ACIDS RESEARCH

Genetic basis of adult migration timing in anadromous steelhead discovered through multivariate association testing

(2016) Jon E. Hess et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon

(2015) Nicola J. Barson et al.   NATURE

Changes in Size and Age of Chinook Salmon Oncorhynchus tshawytscha Returning to Alaska

(2015) Bert Lewis et al.   PLoS One

Genes predict long distance migration and large body size in a migratory fish, Pacific lamprey

(2014) Jon E. Hess et al.   Evolutionary Applications

Use of genotyping by sequencing data to develop a high-throughput and multifunctional SNP panel for conservation applications in Pacific lamprey

(2014) Jon E. Hess et al.   Molecular Ecology Resources

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

(2013) Edward Y Chen et al.   BMC BIOINFORMATICS

Fishway passage bottleneck identification and prioritization: a case study of Pacific lamprey at Bonneville Dam

(2013) Matthew L. Keefer et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Translocating Adult Pacific Lamprey within the Columbia River Basin: State of the Science

(2012) David L. Ward et al.   FISHERIES

Neither philopatric nor panmictic: microsatellite and mtDNA evidence suggests lack of natal homing but limits to dispersal in Pacific lamprey

(2012) ERIN K. SPICE et al.   MOLECULAR ECOLOGY

Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species

(2012) Jon E. Hess et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

A geographic test of species selection using planktonic foraminifera during the Cretaceous/Paleogene mass extinction

(2011) Matthew G. Powell et al.   PALEOBIOLOGY

Oceanic, riverine, and genetic influences on spring chinook salmon migration timing

(2009) James J. Anderson et al.   ECOLOGICAL APPLICATIONS

Do summer temperatures trigger spring maturation in Pacific lamprey,Entosphenus tridentatus?

(2009) B. J. Clemens et al.   ECOLOGY OF FRESHWATER FISH

COLONY: a program for parentage and sibship inference from multilocus genotype data

(2009) OWEN R. JONES et al.   Molecular Ecology Resources

Effects of Body Size and River Environment on the Upstream Migration of Adult Pacific Lampreys

(2009) Matthew L. Keefer et al.   NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS