Shared genomic outliers across two divergent population clusters of a highly threatened seagrass

Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile

(2018) Uwe Groß et al.   BMC GENOMICS

Distinct colonization waves underlie the diversification of the freshwater sculpin (Cottus gobio ) in the Central European Alpine region

(2018) Kay Lucek et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

These aren't the loci you're looking for: Principles of effective SNP filtering for molecular ecologists

(2018) Shannon J. O'Leary et al.   MOLECULAR ECOLOGY

Isolation by environment in the highly mobile olive ridley turtle ( Lepidochelys olivacea ) in the eastern Pacific

(2018) Clara J. Rodríguez-Zárate et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Mega Clonality in an Aquatic Plant—A Potential Survival Strategy in a Changing Environment

(2018) Eric Bricker et al.   Frontiers in Plant Science

Strong genetic differentiation in tropical seagrass Enhalus acoroides (Hydrocharitaceae) at the Indo-Malay Archipelago revealed by microsatellite DNA

(2018) I Nyoman Giri Putra et al.   PeerJ

Ecological disturbance influences adaptive divergence despite high gene flow in golden perch (Macquaria ambigua ): Implications for management and resilience to climate change

(2017) Catherine R. M. Attard et al.   MOLECULAR ECOLOGY

Adaptation despite gene flow? Low recombination helps

(2017) David A. Marques   MOLECULAR ECOLOGY

Historical processes and contemporary ocean currents drive genetic structure in the seagrassThalassia hemprichiiin the Indo-Australian Archipelago

(2017) Udhi E. Hernawan et al.   MOLECULAR ECOLOGY

RADseq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al . (2016)

(2017) Garrett J. McKinney et al.   Molecular Ecology Resources

Evidence for environmental and ecological selection in a microbe with no geographic limits to gene flow

(2017) Kerry A. Whittaker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental and geographic variables are effective surrogates for genetic variation in conservation planning

(2017) Jeffrey O. Hanson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Palaeoclimatic conditions in the Mediterranean explain genetic diversity of Posidonia oceanica seagrass meadows

(2017) Rosa M. Chefaoui et al.   Scientific Reports

Our first year by the numbers

(2017)   Nature Ecology & Evolution

Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness

(2017) Michiru Nishita et al.   Scientific Reports

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

Local adaptation in an estuarine foundation species: Implications for restoration

(2016) Jillian M. Bible et al.   BIOLOGICAL CONSERVATION

Demographic and genetic connectivity: the role and consequences of reproduction, dispersal and recruitment in seagrasses

(2016) Gary A. Kendrick et al.   BIOLOGICAL REVIEWS

Making evolutionary history count: biodiversity planning for coral reef fishes and the conservation of evolutionary processes

(2016) Sophie von der Heyden   CORAL REEFS

Quantifying the dispersal potential of seagrass vegetative fragments: A comparison of multiple subtropical species

(2016) E.J. Weatherall et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Partitioning the effects of isolation by distance, environment, and physical barriers on genomic divergence between parapatric threespine stickleback

(2016) Jesse N. Weber et al.   EVOLUTION

On the maintenance of genetic variation and adaptation to environmental change: considerations from population genomics in fishes

(2016) L. Bernatchez   JOURNAL OF FISH BIOLOGY

Lack of genetic variation in the response of a trematode parasite to ocean acidification

(2016) Hannah Harland et al.   MARINE BIOLOGY

Population genetic diversity and structure of a dominant tropical seagrass, Cymodocea rotundata , in the Western Pacific region

(2016) Dan M. Arriesgado et al.   Marine Ecology-An Evolutionary Perspective

Next-generation biology: Sequencing and data analysis approaches for non-model organisms

(2016) Rute R. da Fonseca et al.   Marine Genomics

Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis)

(2016) W. Chris Funk et al.   MOLECULAR ECOLOGY

Population genomic evidence for adaptive differentiation in the Baltic Sea herring

(2016) Baocheng Guo et al.   MOLECULAR ECOLOGY

Genomics of local adaptation with gene flow

(2016) Anna Tigano et al.   MOLECULAR ECOLOGY

Adaptive genomic divergence under high gene flow between freshwater and brackish-water ecotypes of prickly sculpin (Cottus asper) revealed by Pool-Seq

(2016) Stefan Dennenmoser et al.   MOLECULAR ECOLOGY

Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation

(2016) David B. Lowry et al.   Molecular Ecology Resources

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

(2016) Jeanine L. Olsen et al.   NATURE

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

The Genome of a Southern Hemisphere Seagrass Species ( Zostera muelleri )

(2016) HueyTyng Lee et al.   PLANT PHYSIOLOGY

Distribution of macrophyte species and habitats in South African estuaries

(2016) J.B. Adams et al.   SOUTH AFRICAN JOURNAL OF BOTANY

Adaptive genetic variation distinguishes Chilean blue mussels (Mytilus chilensis) from different marine environments

(2016) Cristián Araneda et al.   Ecology and Evolution

Population genomic evidence for adaptive differentiation in Baltic Sea three-spined sticklebacks

(2015) Baocheng Guo et al.   BMC BIOLOGY

Genetic isolation by distance reveals restricted dispersal across a range of life histories: implications for biodiversity conservation planning across highly variable marine environments

(2015) Daniel Wright et al.   DIVERSITY AND DISTRIBUTIONS

Historical and contemporary determinants of global phylogenetic structure in tropical reef fish faunas

(2015) Fabien Leprieur et al.   ECOGRAPHY

Isolation by environment in White-breasted Nuthatches (Sitta carolinensis) of the Madrean Archipelago sky islands: a landscape genomics approach

(2015) Joseph D. Manthey et al.   MOLECULAR ECOLOGY

Genomic signatures of geographic isolation and natural selection in coral reef fishes

(2015) Michelle R. Gaither et al.   MOLECULAR ECOLOGY

Shared and nonshared genomic divergence in parallel ecotypes ofLittorina saxatilisat a local scale

(2015) Mark Ravinet et al.   MOLECULAR ECOLOGY

Population differentiation determined from putative neutral and divergent adaptive genetic markers in Eulachon (Thaleichthys pacificus, Osmeridae), an anadromous Pacific smelt

(2015) John R. Candy et al.   Molecular Ecology Resources

A new FST-based method to uncover local adaptation using environmental variables

(2015) Pierre de Villemereuil et al.   Methods in Ecology and Evolution

A Short Guide to the Climatic Variables of the Last Glacial Maximum for Biogeographers

(2015) Sara Varela et al.   PLoS One

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Projecting future distribution of the seagrass Zostera noltii under global warming and sea level rise

(2014) Mireia Valle et al.   BIOLOGICAL CONSERVATION

Variation in palaeo-shorelines explains contemporary population genetic patterns of rocky shore species

(2014) J. A. Toms et al.   Biology Letters

Genetic diversity in threatened Posidonia australis seagrass meadows

(2014) Suzanna M. Evans et al.   CONSERVATION GENETICS

Paleo-MARSPEC: gridded ocean climate layers for the mid-Holocene and Last Glacial Maximum

(2014) Elizabeth J. Sbrocco   ECOLOGY

Shifting seas: the impacts of Pleistocene sea-level fluctuations on the evolution of tropical marine taxa

(2014) William B. Ludt et al.   JOURNAL OF BIOGEOGRAPHY

The interaction of environment and genetic diversity within meadows of the seagrass Posidonia australis (Posidoniaceae)

(2014) EA Sinclair et al.   MARINE ECOLOGY PROGRESS SERIES

Genomics of the divergence continuum in an African plant biodiversity hotspot, I: drivers of population divergence inRestio capensis(Restionaceae)

(2014) C. Lexer et al.   MOLECULAR ECOLOGY

Population genomics of the killer whale indicates ecotype evolution in sympatry involving both selection and drift

(2014) Andre E. Moura et al.   MOLECULAR ECOLOGY

The Kuroshio Current influences genetic diversity and population genetic structure of a tropical seagrass,Enhalus acoroides

(2014) Yuichi Nakajima et al.   MOLECULAR ECOLOGY

Isolation by environment

(2014) Ian J. Wang et al.   MOLECULAR ECOLOGY

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

(2014) Christian Schlötterer et al.   NATURE REVIEWS GENETICS

Adaptive divergence with gene flow in incipient speciation ofMiscanthus floridulus/sinensiscomplex (Poaceae)

(2014) Chao-Li Huang et al.   PLANT JOURNAL

Human-mediated drivers of change — impacts on coastal ecosystems and marine biota of South Africa

(2013) A Mead et al.   AFRICAN JOURNAL OF MARINE SCIENCE

Selecting from correlated climate variables: a major source of uncertainty for predicting species distributions under climate change

(2013) Veronika Braunisch et al.   ECOGRAPHY

MARSPEC: ocean climate layers for marine spatial ecology

(2013) Elizabeth J. Sbrocco et al.   ECOLOGY

GENETIC ISOLATION BY ENVIRONMENT OR DISTANCE: WHICH PATTERN OF GENE FLOW IS MOST COMMON?

(2013) Jason P. Sexton et al.   EVOLUTION

Parallel and nonparallel genome-wide divergence among replicate population pairs of freshwater and anadromous Atlantic salmon

(2013) Charles Perrier et al.   MOLECULAR ECOLOGY

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Genomic rearrangements and the evolution of clusters of locally adaptive loci

(2013) S. Yeaman   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome sequencing and population genomics in non-model organisms

(2013) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

diveRsity: AnRpackage for the estimation and exploration of population genetics parameters and their associated errors

(2013) Kevin Keenan et al.   Methods in Ecology and Evolution

ezRAD: a simplified method for genomic genotyping in non-model organisms

(2013) Robert J. Toonen et al.   PeerJ

Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species

(2012) Jon E. Hess et al.   MOLECULAR ECOLOGY

Implications of Extreme Life Span in Clonal Organisms: Millenary Clones in Meadows of the Threatened Seagrass Posidonia oceanica

(2012) Sophie Arnaud-Haond et al.   PLoS One

Genetic Diversity Enhances Restoration Success by Augmenting Ecosystem Services

(2012) Laura K. Reynolds et al.   PLoS One

Extraordinarily rapid life-history divergence between Cryptasterina sea star species

(2012) J. B. Puritz et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster

(2012) Robert Kofler et al.   PLoS Genetics

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

A Genome-wide SNP Genotyping Array Reveals Patterns of Global and Repeated Species-Pair Divergence in Sticklebacks

(2011) Felicity C. Jones et al.   CURRENT BIOLOGY

Genomic toolboxes for conservation biologists

(2011) Francesco Angeloni et al.   Evolutionary Applications

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Outlier SNPs show more genetic structure between two Bay of Fundy metapopulations of Atlantic salmon than do neutral SNPs

(2011) HEATHER FREAMO et al.   Molecular Ecology Resources

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

Population genomics of parallel phenotypic evolution in stickleback across stream-lake ecological transitions

(2011) B. E. Deagle et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Pleistocene sea-level fluctuations and human evolution on the southern coastal plain of South Africa

(2011) John S. Compton   QUATERNARY SCIENCE REVIEWS

CliMond: global high-resolution historical and future scenario climate surfaces for bioclimatic modelling

(2011) Darren J. Kriticos et al.   Methods in Ecology and Evolution

Evidence of connectivity between continental and differentiated insular populations in a highly mobile species

(2010) Rosa Agudo et al.   DIVERSITY AND DISTRIBUTIONS

The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples

(2010) Andreas Futschik et al.   GENETICS

Detecting population structure in a high gene-flow species, Atlantic herring (Clupea harengus): direct, simultaneous evaluation of neutral vs putatively selected loci

(2010) C André et al.   HEREDITY

Isolation by environmental distance in mobile marine species: molecular ecology of franciscana dolphins at their southern range

(2010) MARTIN MENDEZ et al.   MOLECULAR ECOLOGY

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

Testing the significance of canonical axes in redundancy analysis

(2010) Pierre Legendre et al.   Methods in Ecology and Evolution

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Why do we need to integrate population genetics into South African marine protected area planning?

(2009) S von der Heyden   AFRICAN JOURNAL OF MARINE SCIENCE

Clonal diversity and structure related to habitat of the marine angiosperm Thalassia testudinum along the Atlantic coast of Mexico

(2009) Jent Kornelis van Dijk et al.   AQUATIC BOTANY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Pleistocene glaciations and contemporary genetic diversity in a Beringian fish, the broad whitefish,Coregonus nasus(Pallas): inferences from microsatellite DNA variation

(2009) L. N. HARRIS et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

High levels of gene flow and low population genetic structure related to high dispersal potential of a tropical marine angiosperm

(2009) JK van Dijk et al.   MARINE ECOLOGY PROGRESS SERIES

Accelerating loss of seagrasses across the globe threatens coastal ecosystems

(2009) M. Waycott et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

Signatures of selection in natural populations adapted to chronic pollution

(2008) Larissa M Williams et al.   BMC EVOLUTIONARY BIOLOGY

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Genetic population structure of European sprat Sprattus sprattus: differentiation across a steep environmental gradient in a small pelagic fish

(2008) MT Limborg et al.   MARINE ECOLOGY PROGRESS SERIES

A restoration genetics guide for coral reef conservation

(2008) ILIANA B. BAUMS   MOLECULAR ECOLOGY