Selection at a genomic region of major effect is responsible for evolution of complex life histories in anadromous steelhead

Utility of pooled sequencing for association mapping in nonmodel organisms

(2018) Steven J. Micheletti et al.   Molecular Ecology Resources

Salmon spawn fierce debate over protecting endangered species, thanks to a single gene

(2018) Katie Langin   SCIENCE

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

(2017) Stephen E. Fick et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Landscape features along migratory routes influence adaptive genomic variation in anadromous steelhead (Oncorhynchus mykiss )

(2017) Steven J. Micheletti et al.   MOLECULAR ECOLOGY

Accounting for linkage disequilibrium in genome scans for selection without individual genotypes: The local score approach

(2017) María Inés Fariello et al.   MOLECULAR ECOLOGY

The evolutionary basis of premature migration in Pacific salmon highlights the utility of genomics for informing conservation

(2017) Daniel J. Prince et al.   Science Advances

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

The paradox of “premature migration” by adult anadromous salmonid fishes: patterns and hypotheses

(2016) Thomas P. Quinn et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements

(2016) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Genetic basis of adult migration timing in anadromous steelhead discovered through multivariate association testing

(2016) Jon E. Hess et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Parallel evolution of the summer steelhead ecotype in multiple populations from Oregon and Northern California

(2015) Martha Arciniega et al.   CONSERVATION GENETICS

The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology

(2015) Martijn F.L. Derks et al.   Genome Biology and Evolution

The Expression of Leptin, Estrogen Receptors, and Vitellogenin mRNAs in Migrating Female Chum Salmon, <italic>Oncorhynchus keta</italic>: The Effects of Hypo-osmotic Environmental Changes

(2014) Young Jae Choi et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

SAMBLASTER: fast duplicate marking and structural variant read extraction

(2014) G. G. Faust et al.   BIOINFORMATICS

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

(2014) Christian Schlötterer et al.   NATURE REVIEWS GENETICS

Mutations in the NOTCH pathway regulator MIB1 cause left ventricular noncompaction cardiomyopathy

(2013) Guillermo Luxán et al.   NATURE MEDICINE

On the importance of balancing selection in plants

(2013) Lynda F. Delph et al.   NEW PHYTOLOGIST

Earlier Migration Timing, Decreasing Phenotypic Variation, and Biocomplexity in Multiple Salmonid Species

(2013) Ryan P. Kovach et al.   PLoS One

Homing and straying by anadromous salmonids: a review of mechanisms and rates

(2013) Matthew L. Keefer et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Coordinated Effects of Sequence Variation on DNA Binding, Chromatin Structure, and Transcription

(2013) H. Kilpinen et al.   SCIENCE

Gene Expression Profile During Testicular Development in Patients With SRY-negative 46,XX Testicular Disorder of Sex Development

(2013) Kentaro Mizuno et al.   UROLOGY

Regulation of Glucose Transport by ROCK1 Differs from That of ROCK2 and Is Controlled by Actin Polymerization

(2012) Kwang-Hoon Chun et al.   ENDOCRINOLOGY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Metabolomics annotates ABHD3 as a physiologic regulator of medium-chain phospholipids

(2011) Jonathan Z Long et al.   Nature Chemical Biology

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

The genetics of migration on the move

(2011) Miriam Liedvogel et al.   TRENDS IN ECOLOGY & EVOLUTION

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

(2009) Prateek Kumar et al.   Nature Protocols