Response of a methane-driven interaction network to stressor intensification

Disentangling abiotic and biotic controls of aerobic methane oxidation during re-colonization

(2020) Thomas Kaupper et al.   SOIL BIOLOGY & BIOCHEMISTRY

Strength of species interactions determines biodiversity and stability in microbial communities

(2020) Christoph Ratzke et al.   Nature Ecology & Evolution

Microbial nitrogen fixation and methane oxidation are strongly enhanced by light in Sphagnum mosses

(2020) Martine A. R. Kox et al.   AMB Express

Auxotrophic interactions: A stabilizing attribute of aquatic microbial communities?

(2020) Winifred M Johnson et al.   FEMS MICROBIOLOGY ECOLOGY

Increased methane concentration alters soil prokaryotic community structure along an artificial pH gradient

(2019) Petr Heděnec et al.   ANNALS OF MICROBIOLOGY

Ammonium influences kinetics and structure of methanotrophic consortia

(2019) Juan C. López et al.   WASTE MANAGEMENT

Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy

(2019) Martin Taubert et al.   ENVIRONMENTAL MICROBIOLOGY

Succession of bacterial community and methanotrophy during lake shrinkage

(2019) Yongliang Mo et al.   JOURNAL OF SOILS AND SEDIMENTS

Deforestation for oil palm: impact on microbially mediated methane and nitrous oxide emissions, and soil bacterial communities

(2019) Thomas Kaupper et al.   BIOLOGY AND FERTILITY OF SOILS

Living apart together—bacterial volatiles influence methanotrophic growth and activity

(2018) A. J. Veraart et al.   ISME Journal

Phylogenetically distinct methanotrophs modulate methane oxidation in rice paddies across Taiwan

(2018) Yo-Jin Shiau et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effect of salt stress on aerobic methane oxidation and associated methanotrophs; a microcosm study of a natural community from a non-saline environment

(2018) Adrian Ho et al.   SOIL BIOLOGY & BIOCHEMISTRY

It Takes a Village: Microbial Communities Thrive through Interactions and Metabolic Handoffs

(2018) Laura A. Hug et al.   mSystems

Resistance and Recovery of Methane-Oxidizing Communities Depends on Stress Regime and History; A Microcosm Study

(2018) Henri van Kruistum et al.   Frontiers in Microbiology

Geospatial variation in co-occurrence networks of nitrifying microbial guilds

(2018) Christopher M. Jones et al.   MOLECULAR ECOLOGY

Microbial megacities fueled by methane oxidation in a mineral spring cave

(2017) Clemens Karwautz et al.   ISME Journal

Influence of resistance breeding in common bean on rhizosphere microbiome composition and function

(2017) Lucas William Mendes et al.   ISME Journal

Evaluation and update of cutoff values for methanotrophic pmoA gene sequences

(2016) Xi Wen et al.   ARCHIVES OF MICROBIOLOGY

The impact of tropical forest logging and oil palm agriculture on the soil microbiome

(2016) Binu M. Tripathi et al.   MOLECULAR ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Microbiome Networks: A Systems Framework for Identifying Candidate Microbial Assemblages for Disease Management

(2016) R. Poudel et al.   PHYTOPATHOLOGY

Lanthanide-dependent cross-feeding of methane-derived carbon is linked by microbial community interactions

(2016) Sascha M. B. Krause et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recurrence and Frequency of Disturbance have Cumulative Effect on Methanotrophic Activity, Abundance, and Community Structure

(2016) Adrian Ho et al.   Frontiers in Microbiology

Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System

(2016) Adrian Ho et al.   Frontiers in Microbiology

Soil-Borne Microbiome: Linking Diversity to Function

(2015) Lucas W. Mendes et al.   MICROBIAL ECOLOGY

Diazotrophic methanotrophs in peatlands: the missing link?

(2015) Adrian Ho et al.   PLANT AND SOIL

Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker

(2015) Claudia Knief   Frontiers in Microbiology

Exploring methane-oxidizing communities for the co-metabolic degradation of organic micropollutants

(2014) Jessica Benner et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Niche differentiation in nitrogen metabolism among methanotrophs within an operational taxonomic unit

(2014) Sven Hoefman et al.   BMC MICROBIOLOGY

The more, the merrier: heterotroph richness stimulates methanotrophic activity

(2014) Adrian Ho et al.   ISME Journal

Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response

(2014) Igor Y Oshkin et al.   ISME Journal

Remarkable Recovery and Colonization Behaviour of Methane Oxidizing Bacteria in Soil After Disturbance Is Controlled by Methane Source Only

(2014) Yao Pan et al.   MICROBIAL ECOLOGY

Classification of pmoA amplicon pyrosequences using BLAST and the lowest common ancestor method in MEGAN

(2014) Marc G. Dumont et al.   Frontiers in Microbiology

Demonstrating microbial co-occurrence pattern analyses within and between ecosystems

(2014) Ryan J. Williams et al.   Frontiers in Microbiology

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Microbial community responses to anthropogenically induced environmental change: towards a systems approach

(2013) Andrew Bissett et al.   ECOLOGY LETTERS

Macroecology of methane-oxidizing bacteria: the β-diversity ofpmoAgenotypes in tropical and subtropical rice paddies

(2013) Claudia Lüke et al.   ENVIRONMENTAL MICROBIOLOGY

Biogenic methane contributes to the food web of a large, shallow lake

(2013) Helen Agasild et al.   FRESHWATER BIOLOGY

Linking N2O emissions from biochar-amended soil to the structure and function of the N-cycling microbial community

(2013) Johannes Harter et al.   ISME Journal

Methanotrophy induces nitrogen fixation during peatland development

(2013) T. Larmola et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploration and prediction of interactions between methanotrophs and heterotrophs

(2013) Michiel Stock et al.   RESEARCH IN MICROBIOLOGY

Selective stimulation in a natural community of methane oxidizing bacteria: Effects of copper on pmoA transcription and activity

(2013) Adrian Ho et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Species Interactions Alter Evolutionary Responses to a Novel Environment

(2012) Diane Lawrence et al.   PLOS BIOLOGY

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Inhibition of methane oxidation by nitrogenous fertilizers in a paddy soil

(2012) M. Saiful Alam et al.   Frontiers in Microbiology

Stimulation of Methanotrophic Growth in Cocultures by Cobalamin Excreted by Rhizobia

(2011) Hiroyuki Iguchi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DNA-, rRNA- and mRNA-based stable isotope probing of aerobic methanotrophs in lake sediment

(2011) Marc G. Dumont et al.   ENVIRONMENTAL MICROBIOLOGY

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Recovery rates reflect distance to a tipping point in a living system

(2011) Annelies J. Veraart et al.   NATURE

Cultivating Uncultured Bacteria from Northern Wetlands: Knowledge Gained and Remaining Gaps

(2011) Svetlana N. Dedysh   Frontiers in Microbiology

Effects of Ammonium and Nitrite on Growth and Competitive Fitness of Cultivated Methanotrophic Bacteria

(2010) G. Nyerges et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Recovery of methanotrophs from disturbance: population dynamics, evenness and functioning

(2010) Adrian Ho et al.   ISME Journal

Functional Molecular Ecological Networks

(2010) J. Zhou et al.   mBio

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ammonia cometabolism and product inhibition vary considerably among species of methanotrophic bacteria

(2009) Györgyi Nyerges et al.   FEMS MICROBIOLOGY LETTERS

Adapt or disperse: understanding species persistence in a changing world

(2009) MATTY P. BERG et al.   GLOBAL CHANGE BIOLOGY

Environmental, genomic and taxonomic perspectives on methanotrophicVerrucomicrobia

(2009) Huub J. M. Op den Camp et al.   Environmental Microbiology Reports

Activity and composition of methanotrophic bacterial communities in planted rice soil studied by flux measurements, analyses of pmoA gene and stable isotope probing of phospholipid fatty acids

(2008) Minita Shrestha et al.   ENVIRONMENTAL MICROBIOLOGY

Selective stimulation of type I methanotrophs in a rice paddy soil by urea fertilization revealed by RNA-based stable isotope probing

(2008) Matthias Noll et al.   FEMS MICROBIOLOGY ECOLOGY

Applying stable isotope probing of phospholipid fatty acids and rRNA in a Chinese rice field to study activity and composition of the methanotrophic bacterial communities in situ

(2008) Qiongfen Qiu et al.   ISME Journal

Transcription of nitrification genes by the methane-oxidizing bacterium, Methylococcus capsulatus strain Bath

(2008) Amisha T Poret-Peterson et al.   ISME Journal