Strength of species interactions determines biodiversity and stability in microbial communities

Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems

(2019) Alan R. Pacheco et al.   Nature Communications

Microbial coexistence through chemical-mediated interactions

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The Western Diet–Microbiome-Host Interaction and Its Role in Metabolic Disease

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Modifying and reacting to the environmental pH can drive bacterial interactions

(2018) Christoph Ratzke et al.   PLOS BIOLOGY

Ecological suicide in microbes

(2018) Christoph Ratzke et al.   Nature Ecology & Evolution

Emergent simplicity in microbial community assembly

(2018) Joshua E. Goldford et al.   SCIENCE

US Immigration Westernizes the Human Gut Microbiome

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Biodiversity increases and decreases ecosystem stability

(2018) Frank Pennekamp et al.   NATURE

Environmentally Mediated Social Dilemmas

(2018) Sylvie Estrela et al.   TRENDS IN ECOLOGY & EVOLUTION

A communal catalogue reveals Earth’s multiscale microbial diversity

(2017) Luke R. Thompson et al.   NATURE

Bacterial Unculturability and the Formation of Intercellular Metabolic Networks

(2017) Samay Pande et al.   TRENDS IN MICROBIOLOGY

Lotka-Volterra pairwise modeling fails to capture diverse pairwise microbial interactions

(2017) Babak Momeni et al.   eLife

Community structure follows simple assembly rules in microbial microcosms

(2017) Jonathan Friedman et al.   Nature Ecology & Evolution

DADA2: High-resolution sample inference from Illumina amplicon data

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Has land use pushed terrestrial biodiversity beyond the planetary boundary? A global assessment

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The Fiber Gap and the Disappearing Gut Microbiome: Implications for Human Nutrition

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The Ecology and Evolution of Microbial Competition

(2016) Melanie Ghoul et al.   TRENDS IN MICROBIOLOGY

Gut Microbiome: Westernization and the Disappearance of Intestinal Diversity

(2015) Nicola Segata   CURRENT BIOLOGY

Overflow metabolism in Escherichia coli results from efficient proteome allocation

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Inferring species interactions in ecological communities: a comparison of methods at different levels of complexity

(2015) Francesco Carrara et al.   Methods in Ecology and Evolution

Clustering in community structure across replicate ecosystems following a long-term bacterial evolution experiment

(2014) Hasan Celiker et al.   Nature Communications

Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria

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Diversity, stability and resilience of the human gut microbiota

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Human gut microbiome viewed across age and geography

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Microbial interactions: from networks to models

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Diversity of Interaction Types and Ecological Community Stability

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Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

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Global Biodiversity: Indicators of Recent Declines

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Bacterial interactions in biofilms

(2009) Pieter Moons et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY

Inferring species interactions in tropical forests

(2009) I. Volkov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Competition for Light Causes Plant Biodiversity Loss After Eutrophication

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ECOLOGY: Controlling Eutrophication: Nitrogen and Phosphorus

(2009) D. J. Conley et al.   SCIENCE

Eutrophication science: where do we go from here?

(2009) Val H. Smith et al.   TRENDS IN ECOLOGY & EVOLUTION

Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome

(2008) Peter J. Turnbaugh et al.   Cell Host & Microbe

Molecular eco-systems biology: towards an understanding of community function

(2008) Jeroen Raes et al.   NATURE REVIEWS MICROBIOLOGY

Diversity predicts stability and resource use efficiency in natural phytoplankton communities

(2008) Robert Ptacnik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial Ecology of Ocean Biogeochemistry: A Community Perspective

(2008) S. L. Strom   SCIENCE