Presence of mismatches between diagnostic PCR assays and coronavirus SARS-CoV-2 genome

Molecular Diagnosis of a Novel Coronavirus (2019-nCoV) Causing an Outbreak of Pneumonia

(2020) Daniel K W Chu et al.   CLINICAL CHEMISTRY

Genomic diversity of SARS-CoV-2 in Coronavirus Disease 2019 patients

(2020) Zijie Shen et al.   CLINICAL INFECTIOUS DISEASES

Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR

(2020) Victor M Corman et al.   Eurosurveillance

Epidemiologic Features and Clinical Course of Patients Infected With SARS-CoV-2 in Singapore

(2020) Barnaby Edward Young et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Improved molecular diagnosis of COVID-19 by the novel, highly sensitive and specific COVID-19-RdRp/Hel real-time reverse transcription-polymerase chain reaction assay validated in vitro and with clinical specimens

(2020) Jasper Fuk-Woo Chan et al.   JOURNAL OF CLINICAL MICROBIOLOGY

A Familial Cluster of Infection Associated With the 2019 Novel Coronavirus Indicating Possible Person-to-Person Transmission During the Incubation Period

(2020) Ping Yu et al.   JOURNAL OF INFECTIOUS DISEASES

Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding

(2020) Roujian Lu et al.   LANCET

A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster

(2020) Jasper Fuk-Woo Chan et al.   LANCET

Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China

(2020) Chaolin Huang et al.   LANCET

A new coronavirus associated with human respiratory disease in China

(2020) Fan Wu et al.   NATURE

A pneumonia outbreak associated with a new coronavirus of probable bat origin

(2020) Peng Zhou et al.   NATURE

A Novel Coronavirus from Patients with Pneumonia in China, 2019

(2020) Na Zhu et al.   NEW ENGLAND JOURNAL OF MEDICINE

Correlation of Chest CT and RT-PCR Testing in Coronavirus Disease 2019 (COVID-19) in China: A Report of 1014 Cases

(2020) Tao Ai et al.   RADIOLOGY

Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan

(2020) Jasper Fuk-Woo Chan et al.   Emerging Microbes & Infections

On the origin and continuing evolution of SARS-CoV-2

(2020) Xiaolu Tang et al.   National Science Review

The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2

(2020)   Nature Microbiology

Eleven faces of coronavirus disease 2019

(2020) Xiang Dong et al.   ALLERGY

Limits of Detection of 6 Approved RT–PCR Kits for the Novel SARS-Coronavirus-2 (SARS-CoV-2)

(2020) Xueliang Wang et al.   CLINICAL CHEMISTRY

Potential preanalytical and analytical vulnerabilities in the laboratory diagnosis of coronavirus disease 2019 (COVID-19)

(2020) Giuseppe Lippi et al.   CLINICAL CHEMISTRY AND LABORATORY MEDICINE

Development of a Novel, Genome Subtraction-Derived, SARS-CoV-2-Specific COVID-19-nsp2 Real-Time RT-PCR Assay and Its Evaluation Using Clinical Specimens

(2020) Cyril Chik-Yan Yip et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Diagnostic Testing for the Novel Coronavirus

(2020) Joshua M. Sharfstein et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Comparative Performance of SARS-CoV-2 Detection Assays Using Seven Different Primer-Probe Sets and One Assay Kit

(2020) Arun K. Nalla et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Phylogenetic analysis of the first four SARS‐CoV‐2 cases in Chile

(2020) Andrés E. Castillo et al.   JOURNAL OF MEDICAL VIROLOGY

Should RT‐PCR be considered a gold standard in the diagnosis of Covid‐19?

(2020) Moustapha Dramé et al.   JOURNAL OF MEDICAL VIROLOGY

Stability issues of RT-PCR testing of SARS-CoV-2 for hospitalized patients clinically diagnosed with COVID-19

(2020) Yafang Li et al.   JOURNAL OF MEDICAL VIROLOGY

Comparison of SARS‐CoV‐2 detection from nasopharyngeal swab samples by the Roche cobas 6800 SARS‐CoV‐2 test and a laboratory‐developed real‐time RT‐PCR test

(2020) Elisabet Pujadas et al.   JOURNAL OF MEDICAL VIROLOGY

The establishment of reference sequence for SARS‐CoV‐2 and variation analysis

(2020) Changtai Wang et al.   JOURNAL OF MEDICAL VIROLOGY

Keep up with the latest coronavirus research

(2020) Qingyu Chen et al.   NATURE

Phylogenetic network analysis of SARS-CoV-2 genomes

(2020) Peter Forster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Report from the American Society for Microbiology COVID-19 International Summit, 23 March 2020: Value of Diagnostic Testing for SARS–CoV-2/COVID-19

(2020) Robin Patel et al.   mBio

Features and Limitations of LitCovid Hub for Quick Access to Literature About COVID-19

(2020) Morteza Arab-Zozani et al.   Balkan Medical Journal

Development of a Laboratory-safe and Low-cost Detection Protocol for SARS-CoV-2 of the Coronavirus Disease 2019 (COVID-19)

(2020) Joungha Won et al.   Experimental Neurobiology

Genetic diversity and evolution of SARS-CoV-2

(2020) Tung Phan   INFECTION GENETICS AND EVOLUTION

Development of Genetic Diagnostic Methods for Detection for Novel Coronavirus 2019(nCoV-2019) in Japan

(2020) Kazuya Shirato et al.   JAPANESE JOURNAL OF INFECTIOUS DISEASES

Interpret with caution: An evaluation of the commercial AusDiagnostics versus in-house developed assays for the detection of SARS-CoV-2 virus

(2020) H. Rahman et al.   JOURNAL OF CLINICAL VIROLOGY

In silico re-assessment of a diagnostic RT-qPCR assay for universal detection of Influenza A viruses

(2019) Alexander Nagy et al.   Scientific Reports

The Curious Case of the Nidovirus Exoribonuclease: Its Role in RNA Synthesis and Replication Fidelity

(2019) Natacha S. Ogando et al.   Frontiers in Microbiology

GLUE: a flexible software system for virus sequence data

(2018) Joshua B. Singer et al.   BMC BIOINFORMATICS

GISAID: Global initiative on sharing all influenza data – from vision to reality

(2017) Yuelong Shu et al.   Eurosurveillance

Are RNA Viruses Candidate Agents for the Next Global Pandemic? A Review

(2017) R Carrasco-Hernandez et al.   ILAR JOURNAL

Recent sequence variation in probe binding site affected detection of respiratory syncytial virus group B by real-time RT-PCR

(2017) Everlyn Kamau et al.   JOURNAL OF CLINICAL VIROLOGY

Real-time PCR assays for hepatitis B virus DNA quantification may require two different targets

(2017) Chao Liu et al.   Virology Journal

Changing trends and persisting biases in three decades of conservation science

(2017) Moreno Di Marco et al.   Global Ecology and Conservation

Mechanisms of viral mutation

(2016) Rafael Sanjuán et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Genetic Variability in Probe Binding Regions Explains False Negative Results of a Molecular Assay for the Detection of Dengue Virus

(2016) Carmen Koo et al.   VECTOR-BORNE AND ZOONOTIC DISEASES

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

Thinking Outside the Triangle: Replication Fidelity of the Largest RNA Viruses

(2014) Everett Clinton Smith et al.   Annual Review of Virology

Single-Nucleotide Polymorphisms and Other Mismatches Reduce Performance of Quantitative PCR Assays

(2013) S. Lefever et al.   CLINICAL CHEMISTRY

Newly Emerging Mutations in the Matrix Genes of the Human Influenza A(H1N1)pdm09 and A(H3N2) Viruses Reduce the Detection Sensitivity of Real-Time Reverse Transcription-PCR

(2013) J.-R. Yang et al.   JOURNAL OF CLINICAL MICROBIOLOGY

A Naturally Occurring Mutation Within the Probe-Binding Region Compromises a Molecular-Based West Nile Virus Surveillance Assay for Mosquito Pools (Diptera: Culicidae)

(2012) Aaron C. Brault et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Minor groove binder modification of widely used TaqMan probe for hepatitis E virus reduces risk of false negative real-time PCR results

(2012) Jeremy A. Garson et al.   JOURNAL OF VIROLOGICAL METHODS

Development of a Multi-Target TaqMan Assay to Detect Eastern Equine Encephalitis Virus Variants in Mosquitoes

(2012) Philip M. Armstrong et al.   VECTOR-BORNE AND ZOONOTIC DISEASES

Significance of a Single-Nucleotide Primer Mismatch in Hepatitis B Virus Real-Time PCR Diagnostic Assays

(2011) C.-K. Chow et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The impact of primer and probe-template mismatches on the sensitivity of pandemic influenza A/H1N1/2009 virus detection by real-time RT-PCR

(2010) Chonticha Klungthong et al.   JOURNAL OF CLINICAL VIROLOGY

The Effect of Primer-Template Mismatches on the Detection and Quantification of Nucleic Acids Using the 5′ Nuclease Assay

(2009) Ralph Stadhouders et al.   JOURNAL OF MOLECULAR DIAGNOSTICS