Are RNA Viruses Candidate Agents for the Next Global Pandemic? A Review

New Vaccines against Epidemic Infectious Diseases

(2017) John-Arne Røttingen et al.   NEW ENGLAND JOURNAL OF MEDICINE

Developing and financing neglected disease vaccines in our new era of “blue marble health” and the anthropocene epoch

(2017) Peter J. Hotez   VACCINE

Mayaro, Oropouche and Venezuelan Equine Encephalitis viruses: Following in the footsteps of Zika?

(2017) Alfonso J. Rodríguez-Morales et al.   Travel Medicine and Infectious Disease

Estimating the in-vivo HIV template switching and recombination rate

(2016) Deborah Cromer et al.   AIDS

Emerging infectious diseases: Focus on infection control issues for novel coronaviruses (Severe Acute Respiratory Syndrome-CoV and Middle East Respiratory Syndrome-CoV), hemorrhagic fever viruses (Lassa and Ebola), and highly pathogenic avian influenza viruses, A(H5N1) and A(H7N9)

(2016) David J. Weber et al.   AMERICAN JOURNAL OF INFECTION CONTROL

Mechanisms of viral mutation

(2016) Rafael Sanjuán et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Zoonotic Transmission of Two New Strains of Human T-lymphotropic Virus Type 4 in Hunters Bitten by a Gorilla in Central Africa

(2016) Léa Richard et al.   CLINICAL INFECTIOUS DISEASES

Dating the origin and dispersal of Human Papillomavirus type 16 on the basis of ancestral human migrations

(2016) Gianguglielmo Zehender et al.   INFECTION GENETICS AND EVOLUTION

Molecular evolution of emerging Banna virus

(2016) Hong Liu et al.   INFECTION GENETICS AND EVOLUTION

The ecology and adaptive evolution of influenza A interspecies transmission

(2016) Udayan Joseph et al.   Influenza and Other Respiratory Viruses

Bayesian coalescent inference reveals high evolutionary rates and diversification of Zika virus populations

(2016) Alvaro Fajardo et al.   JOURNAL OF MEDICAL VIROLOGY

Arbovirus and insect-specific virus discovery in Kenya by novel six genera multiplex high-resolution melting analysis

(2016) Jandouwe Villinger et al.   Molecular Ecology Resources

Yellow Fever in Angola and Beyond — The Problem of Vaccine Supply and Demand

(2016) Alan D.T. Barrett   NEW ENGLAND JOURNAL OF MEDICINE

Evidence of Sexual Transmission of Zika Virus

(2016) Eric D’Ortenzio et al.   NEW ENGLAND JOURNAL OF MEDICINE

Wildlife Trade and Human Health in Lao PDR: An Assessment of the Zoonotic Disease Risk in Markets

(2016) Zoe F. Greatorex et al.   PLoS One

Virological factors that increase the transmissibility of emerging human viruses

(2016) Jemma L. Geoghegan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reconstructing the emergence of a lethal infectious disease of wildlife supports a key role for spread through translocations by humans

(2016) Stephen J. Price et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Interspecies transmission and chikungunya virus emergence

(2016) Konstantin A Tsetsarkin et al.   Current Opinion in Virology

Evolutionary Analysis of Dengue Serotype 2 Viruses Using Phylogenetic and Bayesian Methods from New Delhi, India

(2016) Nazia Afreen et al.   PLoS Neglected Tropical Diseases

Estimates of global, regional, and national incidence, prevalence, and mortality of HIV, 1980–2015: the Global Burden of Disease Study 2015

(2016) Haidong Wang et al.   Lancet HIV

A Comparison of the Diabetes Risk Score in HIV/AIDS Patients on Highly Active Antiretroviral Therapy (HAART) and HAART-Naïve Patients at the Limbe Regional Hospital, Cameroon

(2016) Christian Akem Dimala et al.   PLoS One

Prevention and Control of Zika as a Mosquito-Borne and Sexually Transmitted Disease: A Mathematical Modeling Analysis

(2016) Daozhou Gao et al.   Scientific Reports

Persistent HIV-related stigma in rural Uganda during a period of increasing HIV incidence despite treatment expansion

(2015) Brian T. Chan et al.   AIDS

Chikungunya: Evolutionary history and recent epidemic spread

(2015) Scott C. Weaver et al.   ANTIVIRAL RESEARCH

Recombination in viruses: Mechanisms, methods of study, and evolutionary consequences

(2015) Marcos Pérez-Losada et al.   INFECTION GENETICS AND EVOLUTION

Emergence of Multidrug-Resistant Influenza A(H1N1)pdm09 Virus Variants in an Immunocompromised Child Treated With Oseltamivir and Zanamivir

(2015) Daisuke Tamura et al.   JOURNAL OF INFECTIOUS DISEASES

Efficacy and effectiveness of an rVSV-vectored vaccine expressing Ebola surface glycoprotein: interim results from the Guinea ring vaccination cluster-randomised trial

(2015) Ana Maria Henao-Restrepo et al.   LANCET

Ledipasvir and sofosbuvir fixed-dose combination with and without ribavirin for 12 weeks in treatment-naive and previously treated Japanese patients with genotype 1 hepatitis C: an open-label, randomised, phase 3 trial

(2015) Masashi Mizokami et al.   LANCET INFECTIOUS DISEASES

Evolutionary consequences of drug resistance: shared principles across diverse targets and organisms

(2015) Diarmaid Hughes et al.   NATURE REVIEWS GENETICS

Structural Analysis of Monomeric RNA-Dependent Polymerases: Evolutionary and Therapeutic Implications

(2015) Rodrigo Jácome et al.   PLoS One

Mutation rate and genotype variation of Ebola virus from Mali case sequences

(2015) T. Hoenen et al.   SCIENCE

Weakly Deleterious Mutations and Low Rates of Recombination Limit the Impact of Natural Selection on Bacterial Genomes

(2015) Morgan N. Price et al.   mBio

Contribution of recombination to the evolutionary history of HIV

(2015) Séverine Vuilleumier et al.   Current Opinion in HIV and AIDS

Homologous and Heterologous Protection of Nonhuman Primates by Ebola and Sudan Virus-Like Particles

(2015) Kelly L. Warfield et al.   PLoS One

Influenza A Virus Transmission Bottlenecks Are Defined by Infection Route and Recipient Host

(2014) Andrew Varble et al.   Cell Host & Microbe

Circulating Avian Influenza Viruses Closely Related to the 1918 Virus Have Pandemic Potential

(2014) Tokiko Watanabe et al.   Cell Host & Microbe

Detecting the emergence of novel, zoonotic viruses pathogenic to humans

(2014) Ronald Rosenberg   CELLULAR AND MOLECULAR LIFE SCIENCES

Investigating the zoonotic origin of the West African Ebola epidemic

(2014) A. Mari Saez et al.   EMBO Molecular Medicine

Climatic suitability of Aedes albopictus in Europe referring to climate change projections: comparison of mechanistic and correlative niche modelling approaches

(2014) D Fischer et al.   Eurosurveillance

Characterizing wild bird contact and seropositivity to highly pathogenic avian influenza A (H5N1) virus in Alaskan residents

(2014) Carrie Reed et al.   Influenza and Other Respiratory Viruses

Fifteen to Twenty Percent of HIV Substitution Mutations Are Associated with Recombination

(2014) T. E. Schlub et al.   JOURNAL OF VIROLOGY

History of domestication and spread of Aedes aegypti - A Review

(2014) Jeffrey R Powell et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ

Ebola — A Growing Threat?

(2014) Heinz Feldmann   NEW ENGLAND JOURNAL OF MEDICINE

Influenza A H1N1 Pandemic Strain Evolution – Divergence and the Potential for Antigenic Drift Variants

(2014) Eili Y. Klein et al.   PLoS One

Mathematical Modeling of Influenza A Virus Dynamics within Swine Farms and the Effects of Vaccination

(2014) Jennifer J. H. Reynolds et al.   PLoS One

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

(2014) S. K. Gire et al.   SCIENCE

The epidemiology and spread of drug resistant human influenza viruses

(2014) Aeron C Hurt   Current Opinion in Virology

RNA replication errors and the evolution of virus pathogenicity and virulence

(2014) Isabel S Novella et al.   Current Opinion in Virology

Alphavirus Mutator Variants Present Host-Specific Defects and Attenuation in Mammalian and Insect Models

(2014) Kathryn Rozen-Gagnon et al.   PLoS Pathogens

Temperature effects on the fidelity of a thermostable HIV-1 reverse transcriptase

(2013) Mar Álvarez et al.   FEBS Journal

Haemonchus contortus as a paradigm and model to study anthelmintic drug resistance

(2013) JOHN S. GILLEARD   PARASITOLOGY

A comparison of bats and rodents as reservoirs of zoonotic viruses: are bats special?

(2013) A. D. Luis et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Infectivity, Transmission, and Pathology of Human-Isolated H7N9 Influenza Virus in Ferrets and Pigs

(2013) H. Zhu et al.   SCIENCE

Urbanization and geographic expansion of zoonotic arboviral diseases: mechanisms and potential strategies for prevention

(2013) Scott C. Weaver   TRENDS IN MICROBIOLOGY

A Decade of Plague in Mahajanga, Madagascar: Insights into the Global Maritime Spread of Pandemic Plague

(2013) A. J. Vogler et al.   mBio

Origins of HIV and the AIDS Pandemic

(2013) P. M. Sharp et al.   Cold Spring Harbor Perspectives in Medicine

Mitotic Evolution of Plasmodium falciparum Shows a Stable Core Genome but Recombination in Antigen Families

(2013) Selina E. R. Bopp et al.   PLoS Genetics

Evolutionary Dynamics of West Nile Virus in the United States, 1999–2011: Phylogeny, Selection Pressure and Evolutionary Time-Scale Analysis

(2013) Germán Añez et al.   PLoS Neglected Tropical Diseases

Coronaviruses Lacking Exoribonuclease Activity Are Susceptible to Lethal Mutagenesis: Evidence for Proofreading and Potential Therapeutics

(2013) Everett Clinton Smith et al.   PLoS Pathogens

Contacts and foot and mouth disease transmission from wild to domestic bovines in Africa

(2013) Eve Miguel et al.   Ecosphere

Mutations in HIV-1gagandpolCompensate for the Loss of Viral Fitness Caused by a Highly Mutated Protease

(2012) Milan Kožíšek et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Combination therapy with amantadine, oseltamivir, and ribavirin for influenza A infection: safety and pharmacokinetics

(2012) Sachiko Seo et al.   ANTIVIRAL THERAPY

Life expectancy living with HIV

(2012) Fumiyo Nakagawa et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Chikungunya virus and prospects for a vaccine

(2012) Scott C Weaver et al.   Expert Review of Vaccines

Prediction and prevention of the next pandemic zoonosis

(2012) Stephen S Morse et al.   LANCET

Efficacy of Combined Therapy with Amantadine, Oseltamivir, and Ribavirin In Vivo against Susceptible and Amantadine-Resistant Influenza A Viruses

(2012) Jack T. Nguyen et al.   PLoS One

Coxsackievirus B3 mutator strains are attenuated in vivo

(2012) N. F. Gnadig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A distinct lineage of influenza A virus from bats

(2012) S. Tong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing

(2012) H. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bats host major mammalian paramyxoviruses

(2012) Jan Felix Drexler et al.   Nature Communications

What can we predict about viral evolution and emergence?

(2012) Edward C Holmes   Current Opinion in Virology

Landscape Ecology of Sylvatic Chikungunya Virus and Mosquito Vectors in Southeastern Senegal

(2012) Diawo Diallo et al.   PLoS Neglected Tropical Diseases

Combating Antimicrobial Resistance: Policy Recommendations to Save Lives

(2011)   CLINICAL INFECTIOUS DISEASES

The use of mathematical models to inform influenza pandemic preparedness and response

(2011) Joseph T Wu et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

Epidemiology of viral encephalitis in 2011

(2011) J.-P. Stahl et al.   MEDECINE ET MALADIES INFECTIEUSES

Why do RNA viruses recombine?

(2011) Etienne Simon-Loriere et al.   NATURE REVIEWS MICROBIOLOGY

Arbovirus high fidelity variant loses fitness in mosquitoes and mice

(2011) L. L. Coffey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for differing evolutionary dynamics of A/H5N1 viruses among countries applying or not applying avian influenza vaccination in poultry

(2011) Giovanni Cattoli et al.   VACCINE

An Insect Nidovirus Emerging from a Primary Tropical Rainforest

(2011) F. Zirkel et al.   mBio

The Evolutionary Genetics of Emerging Viruses

(2010) Edward C. Holmes   Annual Review of Ecology Evolution and Systematics

Using Geographic Information Systems and Decision Support Systems for the Prediction, Prevention, and Control of Vector-Borne Diseases

(2010) Lars Eisen et al.   Annual Review of Entomology

Side effects of long-term oral antiviral therapy for hepatitis B

(2010) Robert J. Fontana   HEPATOLOGY

MultiDrug-Resistant 2009 Pandemic Influenza A(H1N1) Viruses Maintain Fitness and Transmissibility in Ferrets

(2010) Matthew J. Memoli et al.   JOURNAL OF INFECTIOUS DISEASES

The RNA Virus Quasispecies: Fact or Fiction?

(2010) Edward C. Holmes   JOURNAL OF MOLECULAR BIOLOGY

Bat Guano Virome: Predominance of Dietary Viruses from Insects and Plants plus Novel Mammalian Viruses

(2010) L. Li et al.   JOURNAL OF VIROLOGY

Ecoepidemiology and Complete Genome Comparison of Different Strains of Severe Acute Respiratory Syndrome-Related Rhinolophus Bat Coronavirus in China Reveal Bats as a Reservoir for Acute, Self-Limiting Infection That Allows Recombination Events

(2010) S. K. P. Lau et al.   JOURNAL OF VIROLOGY

Measurements of spontaneous rates of mutations in the recent past and the near future

(2010) F. A. Kondrashov et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Host Phylogeny Constrains Cross-Species Emergence and Establishment of Rabies Virus in Bats

(2010) D. G. Streicker et al.   SCIENCE

Retroviral RNA Dimerization and Packaging: The What, How, When, Where, and Why

(2010) Silas F. Johnson et al.   PLoS Pathogens

Quasispecies Theory and the Behavior of RNA Viruses

(2010) Adam S. Lauring et al.   PLoS Pathogens

Infidelity of SARS-CoV Nsp14-Exonuclease Mutant Virus Replication Is Revealed by Complete Genome Sequencing

(2010) Lance D. Eckerle et al.   PLoS Pathogens

Effect of Ribavirin on the Mutation Rate and Spectrum of Hepatitis C Virus In Vivo

(2009) J. M. Cuevas et al.   JOURNAL OF VIROLOGY

Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus

(2009) M. Al Rwahnih et al.   VIROLOGY

Assessment of a new strategy, based onAedes aegypti(L.) pupal productivity, for the surveillance and control of dengue transmission in Thailand

(2008) P. Barbazan et al.   ANNALS OF TROPICAL MEDICINE AND PARASITOLOGY

Highly pathogenic RNA viral infections: Challenges for antiviral research

(2008) Mike Bray   ANTIVIRAL RESEARCH

Evolutionary rates and timescale comparison of Chikungunya viruses inferred from the whole genome/E1 gene with special reference to the 2005–07 outbreak in the Indian subcontinent

(2008) S CHERIAN et al.   INFECTION GENETICS AND EVOLUTION

Reduced Viral Replication Capacity of Human Immunodeficiency Virus Type 1 Subtype C Caused by Cytotoxic-T-Lymphocyte Escape Mutations in HLA-B57 Epitopes of Capsid Protein

(2008) C. L. Boutwell et al.   JOURNAL OF VIROLOGY

Global trends in emerging infectious diseases

(2008) Kate E. Jones et al.   NATURE

Rates of evolutionary change in viruses: patterns and determinants

(2008) Siobain Duffy et al.   NATURE REVIEWS GENETICS

Arbovirus evolution in vivo is constrained by host alternation

(2008) L. L. Coffey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogeny and geography predict pathogen community similarity in wild primates and humans

(2008) T. J. Davies et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Virus Attenuation by Genome-Scale Changes in Codon Pair Bias

(2008) J. R. Coleman et al.   SCIENCE

The Epidemic of Antibiotic-Resistant Infections: A Call to Action for the Medical Community from the Infectious Diseases Society of America

(2007) B. Spellberg et al.   CLINICAL INFECTIOUS DISEASES