Genome sequencing and population genomics modeling provide insights into the local adaptation of weeping forsythia

AP2/ERF Transcription Factor Regulatory Networks in Hormone and Abiotic Stress Responses in Arabidopsis

(2019) Zhouli Xie et al.   Frontiers in Plant Science

Standing genomic variation within coding and regulatory regions contributes to the adaptive capacity to climate in a foundation tree species

(2019) Collin W. Ahrens et al.   MOLECULAR ECOLOGY

Comparative Transcriptome Analysis of Waterlogging-Sensitive and Tolerant Zombi Pea (Vigna Vexillata) Reveals Energy Conservation and Root Plasticity Controlling Waterlogging Tolerance

(2019) Butsayawarapat et al.   Plants-Basel

Modelling multilocus selection in an individual‐based, spatially‐explicit landscape genetics framework

(2019) Erin L. Landguth et al.   Molecular Ecology Resources

Demographic History and Genetic Adaptation in the Himalayan Region Inferred from Genome-Wide SNP Genotypes of 49 Populations

(2018) Elena Arciero et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary Origins of Toll-like Receptor Signaling

(2018) Joseph J Brennan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Population genomics provide insights into the evolution and adaptation of the eastern honey bee (Apis cerana)

(2018) Chao Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Evolutionary History of Nebraska Deer Mice: Local Adaptation in the Face of Strong Gene Flow

(2018) Susanne P Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nanopore sequencing and assembly of a human genome with ultra-long reads

(2018) Miten Jain et al.   NATURE BIOTECHNOLOGY

Soil environment is a key driver of adaptation in Medicago truncatula : new insights from landscape genomics

(2018) Jimena Guerrero et al.   NEW PHYTOLOGIST

Editorial: The Least Cost Path From Landscape Genetics to Landscape Genomics: Challenges and Opportunities to Explore NGS Data in a Spatially Explicit Context

(2018) Samuel A. Cushman et al.   Frontiers in Genetics

Natural variation in stomata size contributes to the local adaptation of water-use efficiency in Arabidopsis thaliana

(2018) Hannes Dittberner et al.   MOLECULAR ECOLOGY

Characterization of the APETALA2/Ethylene-responsive factor (AP2/ERF) transcription factor family in sunflower

(2018) Somayeh Najafi et al.   Scientific Reports

Genome-wide signals of drift and local adaptation during rapid lineage divergence in a songbird

(2018) Guillermo Friis et al.   MOLECULAR ECOLOGY

The genomic basis of adaptation to calcareous and siliceous soils in Arabidopsis lyrata

(2018) Alessia Guggisberg et al.   MOLECULAR ECOLOGY

Comparative transcriptome analysis to elucidate the enhanced thermotolerance of tea plants (Camellia sinensis) treated with exogenous calcium

(2018) Mingle Wang et al.   PLANTA

The chromosome-level quality genome provides insights into the evolution of the biosynthesis genes for aroma compounds of Osmanthus fragrans

(2018) Xiulian Yang et al.   Horticulture Research

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Landscape genomics analysis of Achyranthes bidentata reveal adaptive genetic variations are driven by environmental variations relating to ecological habit

(2017) Jie Yang et al.   POPULATION ECOLOGY

Structural basis of jasmonate-amido synthetase FIN219 in complex with glutathione S-transferase FIP1 during the JA signal regulation

(2017) Chun-Yen Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome of wild olive and the evolution of oil biosynthesis

(2017) Turgay Unver et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ten Years of Landscape Genomics: Challenges and Opportunities

(2017) Yong Li et al.   Frontiers in Plant Science

Abiotic Stress Signaling and Responses in Plants

(2016) Jian-Kang Zhu   CELL

High performance computation of landscape genomic models including local indicators of spatial association

(2016) S. Stucki et al.   Molecular Ecology Resources

Genome sequence and genetic diversity of European ash trees

(2016) Elizabeth S. A. Sollars et al.   NATURE

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

Genomic resources and their influence on the detection of the signal of positive selection in genome scans

(2015) S. Manel et al.   MOLECULAR ECOLOGY

Carotenoid Metabolism in Plants

(2015) Nazia Nisar et al.   Molecular Plant

A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants

(2015) Lars G Fritsche et al.   NATURE GENETICS

Population genetics of the widespread shrub Forsythia suspensa (Oleaceae) in warm-temperate China using microsatellite loci: implication for conservation

(2015) Zi-Zhen Fu et al.   PLANT SYSTEMATICS AND EVOLUTION

Molecular data and ecological niche modeling reveal population dynamics of widespread shrub Forsythia suspensa (Oleaceae) in China’s warm-temperate zone in response to climate change during the Pleistocene

(2014) Zi-Zhen Fu et al.   BMC EVOLUTIONARY BIOLOGY

Early and delayed long-term transcriptional changes and short-term transient responses during cold acclimation in olive leaves

(2014) María de la O Leyva-Pérez et al.   DNA RESEARCH

Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation

(2014) Matthew C. Fitzpatrick et al.   ECOLOGY LETTERS

Photosynthetic complex stoichiometry dynamics in higher plants: biogenesis, function, and turnover of ATP synthase and the cytochrome b6f complex

(2014) Mark Aurel Schöttler et al.   JOURNAL OF EXPERIMENTAL BOTANY

Grand challenges in evolutionary and population genetics: the importance of integrating epigenetics, genomics, modeling, and experimentation

(2014) Samuel A. Cushman   Frontiers in Genetics

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ten years of landscape genetics

(2013) Stéphanie Manel et al.   TRENDS IN ECOLOGY & EVOLUTION

Local Adaptation in the Flowering-Time Gene Network of Balsam Poplar, Populus balsamifera L.

(2012) S. R. Keller et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomics of adaptation

(2012) J. Radwan et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Drought stress-induced oxidative stress and antioxidative responses in four wheat (Triticum aestivumL.) varieties

(2011) Usha Chakraborty et al.   Archives of Agronomy and Soil Science

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Global patterns of genetic variation in plant species along vertical and horizontal gradients on mountains

(2007) Takafumi Ohsawa et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY