Early and delayed long-term transcriptional changes and short-term transient responses during cold acclimation in olive leaves

Sma3s: A Three-Step Modular Annotator for Large Sequence Datasets

(2014) A. Munoz-Merida et al.   DNA RESEARCH

De Novo Assembly and Functional Annotation of the Olive (Olea europaea) Transcriptome

(2013) A. Munoz-Merida et al.   DNA RESEARCH

Cutoffs and k-mers: implications from a transcriptome study in allopolyploid plants

(2012) Nicole Gruenheit et al.   BMC GENOMICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Cold perception and gene expression differ inOlea europaeaseed coat and embryo during drupe cold acclimation

(2012) S. D'Angeli et al.   NEW PHYTOLOGIST

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Comparative Transcriptome Profiling of Chilling Stress Responsiveness in Two Contrasting Rice Genotypes

(2012) Ting Zhang et al.   PLoS One

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study

(2011) Qiong-Yi Zhao et al.   BMC BIOINFORMATICS

Cold affects the transcription of fatty acid desaturases and oil quality in the fruit of Olea europaea L. genotypes with different cold hardiness

(2011) M. Matteucci et al.   JOURNAL OF EXPERIMENTAL BOTANY

Homeostasis of plasma membrane viscosity in fluctuating temperatures

(2011) Alexandre Martinière et al.   NEW PHYTOLOGIST

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Analysis of short-term changes in the Arabidopsis thaliana glycerolipidome in response to temperature and light

(2011) Asdrubal Burgos et al.   PLANT JOURNAL

High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions

(2011) Camila Caldana et al.   PLANT JOURNAL

Effect of different environmental stresses on the expression of oleate desaturase genes and fatty acid composition in olive fruit

(2010) M. Luisa Hernández et al.   PHYTOCHEMISTRY

Verticillium wilt of olive: a case study to implement an integrated strategy to control a soil-borne pathogen

(2010) Francisco Javier López-Escudero et al.   PLANT AND SOIL

Calcium Signals: The Lead Currency of Plant Information Processing

(2010) J. Kudla et al.   PLANT CELL

De novo transcriptome assembly with ABySS

(2009) I. Birol et al.   BIOINFORMATICS

Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development

(2009) Fiammetta Alagna et al.   BMC GENOMICS

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses

(2009) M. J. Fullwood et al.   GENOME RESEARCH

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Stress-induced changes in theArabidopsis thalianatranscriptome analyzed using whole-genome tiling arrays

(2009) Georg Zeller et al.   PLANT JOURNAL

Fatty acid unsaturation, mobilization, and regulation in the response of plants to stress

(2008) Robert G. Upchurch   BIOTECHNOLOGY LETTERS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array

(2008) A. Matsui et al.   PLANT AND CELL PHYSIOLOGY

Glycinebetaine: an effective protectant against abiotic stress in plants

(2008) Tony H.H. Chen et al.   TRENDS IN PLANT SCIENCE