Compositional and functional characterisation of biomass-degrading microbial communities in guts of plant fibre- and soil-feeding higher termites

Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites

(2020) Vincent Hervé et al.   PeerJ

Carbohydrate Hydrolytic Potential and Redundancy of an Anaerobic Digestion Microbiome Exposed to Acidosis, as Uncovered by Metagenomics

(2019) Marie Bertucci et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fibre digestion by rumen microbiota – a review of recent metagenomic and metatranscriptomic studies

(2019) Stephanie A Terry et al.   CANADIAN JOURNAL OF ANIMAL SCIENCE

Rampant Host Switching Shaped the Termite Gut Microbiome

(2018) Thomas Bourguignon et al.   CURRENT BIOLOGY

Human Gut Microbiome: Function Matters

(2018) Anna Heintz-Buschart et al.   TRENDS IN MICROBIOLOGY

Mixed-Mode Transmission Shapes Termite Gut Community Assemblies

(2018) Rafael R. da Costa et al.   TRENDS IN MICROBIOLOGY

Mechanisms of utilisation of arabinoxylans by a porcine faecal inoculum: competition and co-operation

(2018) Guangli Feng et al.   Scientific Reports

Metavirome Sequencing of the Termite Gut Reveals the Presence of an Unexplored Bacteriophage Community

(2018) Chinmay V. Tikhe et al.   Frontiers in Microbiology

Low-abundant bacteria drive compositional changes in the gut microbiota after dietary alteration

(2018) Jacquelynn Benjamino et al.   Microbiome

Functional metagenomics reveals abundant polysaccharide-degrading gene clusters and cellobiose utilization pathways within gut microbiota of a wood-feeding higher termite

(2018) Ning Liu et al.   ISME Journal

Fiber-associated spirochetes are major agents of hemicellulose degradation in the hindgut of wood-feeding higher termites

(2018) Gaku Tokuda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polysaccharide Utilization Loci: Fueling Microbial Communities

(2017) Julie M. Grondin et al.   JOURNAL OF BACTERIOLOGY

Deciphering and shaping bacterial diversity through CRISPR

(2016) Alexandra E Briner et al.   CURRENT OPINION IN MICROBIOLOGY

Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality

(2016) Yue Jiang et al.   Microbiome

Diet is the primary determinant of bacterial community structure in the guts of higher termites

(2015) Aram Mikaelyan et al.   MOLECULAR ECOLOGY

Classifying the bacterial gut microbiota of termites and cockroaches: A curated phylogenetic reference database (DictDb)

(2015) Aram Mikaelyan et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Metagenomic analysis of the microbiota in the highly compartmented hindguts of six wood- or soil-feeding higher termites

(2015) Karen Rossmassler et al.   Microbiome

A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes

(2015) Nurdyana Abdul Rahman et al.   Microbiome

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

(2015) Hugo Roume et al.   npj Biofilms and Microbiomes

The Cockroach Origin of the Termite Gut Microbiota: Patterns in Bacterial Community Structure Reflect Major Evolutionary Events

(2014) Carsten Dietrich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Symbiotic digestion of lignocellulose in termite guts

(2014) Andreas Brune   NATURE REVIEWS MICROBIOLOGY

Pandoraviruses: Amoeba Viruses with Genomes Up to 2.5 Mb Reaching That of Parasitic Eukaryotes

(2013) N. Philippe et al.   SCIENCE

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

N-Acetylgalactosamine Utilization Pathway and Regulon in Proteobacteria

(2012) Semen A. Leyn et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts

(2012) L. Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

(2012) Georgia Giannoukos et al.   GENOME BIOLOGY

Feeding ecology and phylogenetic structure of a complex neotropical termite assemblage, revealed by nitrogen stable isotope ratios

(2011) THOMAS BOURGUIGNON et al.   ECOLOGICAL ENTOMOLOGY

Influence of termites on ecosystem functioning. Ecosystem services provided by termites

(2011) Pascal Jouquet et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Evans Review: Plant cell walls: the skeleton of the plant world

(2010) Monika S. Doblin et al.   FUNCTIONAL PLANT BIOLOGY

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Cellulolytic Systems in Insects

(2009) Hirofumi Watanabe et al.   Annual Review of Entomology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

RNA-Seq gene expression estimation with read mapping uncertainty

(2009) Bo Li et al.   BIOINFORMATICS