Carbohydrate Hydrolytic Potential and Redundancy of an Anaerobic Digestion Microbiome Exposed to Acidosis, as Uncovered by Metagenomics
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Carbohydrate Hydrolytic Potential and Redundancy of an Anaerobic Digestion Microbiome Exposed to Acidosis, as Uncovered by Metagenomics
Authors
Keywords
-
Journal
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Volume 85, Issue 15, Pages -
Publisher
American Society for Microbiology
Online
2019-06-03
DOI
10.1128/aem.00895-19
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Wood-Derived Dietary Fibers Promote Beneficial Human Gut Microbiota
- (2019) Sabina Leanti La Rosa et al. mSphere
- Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies
- (2018) Anna M. Alessi et al. Biotechnology for Biofuels
- A year of monitoring 20 mesophilic full-scale bioreactors reveals the existence of stable but different core microbiomes in bio-waste and wastewater anaerobic digestion systems
- (2018) Magdalena Calusinska et al. Biotechnology for Biofuels
- Human Gut Microbiome: Function Matters
- (2018) Anna Heintz-Buschart et al. TRENDS IN MICROBIOLOGY
- Metagenomic binning reveals the functional roles of core abundant microorganisms in twelve full-scale biogas plants
- (2018) Stefano Campanaro et al. WATER RESEARCH
- Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
- (2018) Robert D. Stewart et al. Nature Communications
- Linking Microbial Community Structure and Function During the Acidified Anaerobic Digestion of Grass
- (2018) Aoife Joyce et al. Frontiers in Microbiology
- Function and functional redundancy in microbial systems
- (2018) Stilianos Louca et al. Nature Ecology & Evolution
- Spatial Distribution and Diverse Metabolic Functions of Lignocellulose-Degrading Uncultured Bacteria as Revealed by Genome-Centric Metagenomics
- (2018) Panagiotis G. Kougias et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Potential of multivariate statistical process monitoring based on the biogas composition to detect free ammonia intoxication in anaerobic reactors
- (2018) Sébastien Lemaigre et al. BIOCHEMICAL ENGINEERING JOURNAL
- Alpha- and beta-mannan utilization by marine Bacteroidetes
- (2018) Jing Chen et al. ENVIRONMENTAL MICROBIOLOGY
- Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation
- (2017) Olov Svartström et al. ISME Journal
- Polysaccharide Utilization Loci: Fueling Microbial Communities
- (2017) Julie M. Grondin et al. JOURNAL OF BACTERIOLOGY
- A Bacteroidetes locus dedicated to fungal 1,6-β-glucan degradation: Unique substrate conformation drives specificity of the key endo-1,6-β-glucanase
- (2017) Max J. Temple et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- PULDB: the expanded database of Polysaccharide Utilization Loci
- (2017) Nicolas Terrapon et al. NUCLEIC ACIDS RESEARCH
- Characterization of Potential Polysaccharide Utilization Systems in the Marine Bacteroidetes Gramella Flava JLT2011 Using a Multi-Omics Approach
- (2017) Kai Tang et al. Frontiers in Microbiology
- Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
- (2017) Donovan H. Parks et al. Nature Microbiology
- Start-up phase of an anaerobic full-scale farm reactor – Appearance of mesophilic anaerobic conditions and establishment of the methanogenic microbial community
- (2016) Xavier Goux et al. BIORESOURCE TECHNOLOGY
- Functions, structures, and applications of cellobiose 2-epimerase and glycoside hydrolase family 130 mannoside phosphorylases
- (2016) Wataru Saburi BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY
- Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates
- (2016) Irena Maus et al. Biotechnology for Biofuels
- Transfer of a static PCA-MSPC model from a steady-state anaerobic reactor to an independent anaerobic reactor exposed to organic overload
- (2016) Sébastien Lemaigre et al. CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS
- Genome-centric resolution of microbial diversity, metabolism and interactions in anaerobic digestion
- (2016) Inka Vanwonterghem et al. ENVIRONMENTAL MICROBIOLOGY
- A β-mannan utilization locus inBacteroides ovatusinvolves a GH36 α-galactosidase active on galactomannans
- (2016) Sumitha K. Reddy et al. FEBS LETTERS
- Role of theganSPQABOperon in Degradation of Galactan by Bacillus subtilis
- (2016) Hildegard Watzlawick et al. JOURNAL OF BACTERIOLOGY
- Galactomannan Catabolism Conferred by a Polysaccharide Utilization Locus ofBacteroides ovatus
- (2016) Viktoria Bågenholm et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
- (2016) Minoru Kanehisa et al. JOURNAL OF MOLECULAR BIOLOGY
- Functional characterization of a gene locus from an uncultured gutBacteroidesconferring xylo-oligosaccharides utilization toEscherichia coli
- (2016) Alexandra S. Tauzin et al. MOLECULAR MICROBIOLOGY
- An extremely alkaline mannanase from Streptomyces sp. CS428 hydrolyzes galactomannan producing series of mannooligosaccharides
- (2016) Pradeep G. C. et al. WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY
- Enzymatic hydrolysis of biomass from wood
- (2016) Consolación Álvarez et al. Microbial Biotechnology
- Microbial community dynamics in replicate anaerobic digesters exposed sequentially to increasing organic loading rate, acidosis, and process recovery
- (2015) Xavier Goux et al. Biotechnology for Biofuels
- Glycan complexity dictates microbial resource allocation in the large intestine
- (2015) Artur Rogowski et al. Nature Communications
- Characterization of microbial community structure during continuous anaerobic digestion of straw and cow manure
- (2015) Li Sun et al. Microbial Biotechnology
- Comparison of the microbial communities in solid-state anaerobic digestion (SS-AD) reactors operated at mesophilic and thermophilic temperatures
- (2014) Yueh-Fen Li et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Secretion of Bacterial Lipoproteins: Through the Cytoplasmic Membrane, the Periplasm and Beyond
- (2014) Wolfram R. Zückert BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- Automatic prediction of polysaccharide utilization loci in Bacteroidetes species
- (2014) Nicolas Terrapon et al. BIOINFORMATICS
- Anaerobic digestion of food waste for volatile fatty acids (VFAs) production with different types of inoculum: Effect of pH
- (2014) Kun Wang et al. BIORESOURCE TECHNOLOGY
- Konjac glucomannan, a promising polysaccharide for OCDDS
- (2014) Cui Zhang et al. CARBOHYDRATE POLYMERS
- A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes
- (2014) Johan Larsbrink et al. NATURE
- Expanded microbial genome coverage and improved protein family annotation in the COG database
- (2014) Michael Y. Galperin et al. NUCLEIC ACIDS RESEARCH
- Several Genes Encoding Enzymes with the Same Activity Are Necessary for Aerobic Fungal Degradation of Cellulose in Nature
- (2014) Peter K. Busk et al. PLoS One
- Xylan utilization in human gut commensal bacteria is orchestrated by unique modular organization of polysaccharide-degrading enzymes
- (2014) M. Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Do Rumen Bacteroidetes Utilize an Alternative Mechanism for Cellulose Degradation?
- (2014) A. E. Naas et al. mBio
- Members of the uncultured bacterial candidate division WWE1 are implicated in anaerobic digestion of cellulose
- (2014) Rim Driss Limam et al. MicrobiologyOpen
- The mannobiose-forming exo-mannanase involved in a new mannan catabolic pathway in Bacteroides fragilis
- (2013) Kazuki Kawaguchi et al. ARCHIVES OF MICROBIOLOGY
- Hydrolysis of konjac glucomannan by Trichoderma reesei mannanase and endoglucanases Cel7B and Cel5A for the production of glucomannooligosaccharides
- (2013) Atte Mikkelson et al. CARBOHYDRATE RESEARCH
- The Structure of aStreptomyces avermitilisα-l-Rhamnosidase Reveals a Novel Carbohydrate-binding Module CBM67 within the Six-domain Arrangement
- (2013) Zui Fujimoto et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Optimized protocol for expression and purification of membrane-bound PglB, a bacterial oligosaccharyl transferase
- (2013) Marcie B. Jaffee et al. PROTEIN EXPRESSION AND PURIFICATION
- PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
- (2013) Nicola Segata et al. Nature Communications
- Acetylation of woody lignocellulose: significance and regulation
- (2013) Prashant Mohan-Anupama Pawar et al. Frontiers in Plant Science
- Metabolic Mechanism of Mannan in a Ruminal Bacterium,Ruminococcus albus, Involving Two Mannoside Phosphorylases and Cellobiose 2-Epimerase
- (2012) Ryosuke Kawahara et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- dbCAN: a web resource for automated carbohydrate-active enzyme annotation
- (2012) Yanbin Yin et al. NUCLEIC ACIDS RESEARCH
- Enhanced cellulose degradation by targeted integration of a cohesin-fused -glucosidase into the Clostridium thermocellum cellulosome
- (2012) G. Gefen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- New microbial mannan catabolic pathway that involves a novel mannosylglucose phosphorylase
- (2011) Takeshi Senoura et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- IMG: the integrated microbial genomes database and comparative analysis system
- (2011) V. M. Markowitz et al. NUCLEIC ACIDS RESEARCH
- Archaeal community composition affects the function of anaerobic co-digesters in response to organic overload
- (2011) S. Lerm et al. WASTE MANAGEMENT
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Complex Glycan Catabolism by the Human Gut Microbiota: The Bacteroidetes Sus-like Paradigm
- (2009) Eric C. Martens et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The RAST Server: Rapid Annotations using Subsystems Technology
- (2008) Ramy K Aziz et al. BMC GENOMICS
- Novel lineages of Planctomycetes densely colonize the alkaline gut of soil-feeding termites (Cubitermes spp.)
- (2008) Tim Köhler et al. ENVIRONMENTAL MICROBIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now