Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites
Authors
Keywords
-
Journal
PeerJ
Volume 8, Issue -, Pages e8614
Publisher
PeerJ
Online
2020-02-13
DOI
10.7717/peerj.8614
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Termites can decompose more than half of deadwood in tropical rainforest
- (2019) Hannah M. Griffiths et al. CURRENT BIOLOGY
- Interactive Tree Of Life (iTOL) v4: recent updates and new developments
- (2019) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
- (2019) Dongwan D. Kang et al. PeerJ
- GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
- (2019) Pierre-Alain Chaumeil et al. BIOINFORMATICS
- Diet is not the primary driver of bacterial community structure in the gut of litter-feeding cockroaches
- (2019) Niclas Lampert et al. BMC MICROBIOLOGY
- Insights into the ecological roles and evolution of methyl-coenzyme M reductase-containing hot spring Archaea
- (2019) Zheng-Shuang Hua et al. Nature Communications
- Rampant Host Switching Shaped the Termite Gut Microbiome
- (2018) Thomas Bourguignon et al. CURRENT BIOLOGY
- Lactococcus reticulitermitis sp. nov., isolated from the gut of the subterranean termite Reticulitermes speratus
- (2018) Masahiro Yuki et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Phylogenetic Diversity and Single-Cell Genome Analysis of “Melainabacteria”, a Non-Photosynthetic Cyanobacterial Group, in the Termite Gut
- (2018) Yuniar Devi Utami et al. MICROBES AND ENVIRONMENTS
- Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
- (2018) Robert D. Stewart et al. Nature Communications
- Microbial Communities of the Gut and Nest of the Humus- and Litter-Feeding Termite Procornitermes araujoi (Syntermitinae)
- (2018) Edimar A. Moreira et al. CURRENT MICROBIOLOGY
- A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
- (2018) Donovan H Parks et al. NATURE BIOTECHNOLOGY
- Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation
- (2018) Andrea Söllinger et al. mSystems
- Genome analyses of uncultured TG2/ZB3 bacteria in ‘Margulisbacteria’ specifically attached to ectosymbiotic spirochetes of protists in the termite gut
- (2018) Yuniar Devi Utami et al. ISME Journal
- Fiber-associated spirochetes are major agents of hemicellulose degradation in the hindgut of wood-feeding higher termites
- (2018) Gaku Tokuda et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Phylogenomic Diversity of Herbivore-Associated Fibrobacter spp. Is Correlated to Lignocellulose-Degrading Potential
- (2018) Anthony P. Neumann et al. mSphere
- Fibrobacter communities in the gastrointestinal tracts of diverse hindgut-fermenting herbivores are distinct from those of the rumen
- (2017) Anthony P. Neumann et al. ENVIRONMENTAL MICROBIOLOGY
- Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation
- (2017) Olov Svartström et al. ISME Journal
- SMS: Smart Model Selection in PhyML
- (2017) Vincent Lefort et al. MOLECULAR BIOLOGY AND EVOLUTION
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
- (2017) Robert M Bowers et al. NATURE BIOTECHNOLOGY
- Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
- (2017) Alexander Sczyrba et al. NATURE METHODS
- The trajectory of microbial single-cell sequencing
- (2017) Tanja Woyke et al. NATURE METHODS
- Towards a balanced view of the bacterial tree of life
- (2017) Frederik Schulz et al. Microbiome
- Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
- (2017) Donovan H. Parks et al. Nature Microbiology
- The complete mitochondrial genomes of the higher termites Labiotermes labralis and Embiratermes neotenicus (Termitidae: Syntermitinae)
- (2017) Vincent Hervé et al. Mitochondrial DNA Part B-Resources
- Genomic evidence for distinct carbon substrate preferences and ecological niches of Bathyarchaeota in estuarine sediments
- (2016) Cassandre Sara Lazar et al. ENVIRONMENTAL MICROBIOLOGY
- Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum
- (2016) Stefan Spring et al. ISME Journal
- Status of the Archaeal and Bacterial Census: an Update
- (2016) Patrick D. Schloss et al. mBio
- Diversity and resilience of the wood-feeding higher termite Mironasutitermes shangchengensis gut microbiota in response to temporal and diet variations
- (2016) Ying Wang et al. Ecology and Evolution
- A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres
- (2016) Nurdyana Abdul Rahman et al. Frontiers in Microbiology
- Phenotypic and Genomic Properties of Chitinispirillum alkaliphilum gen. nov., sp. nov., A Haloalkaliphilic Anaerobic Chitinolytic Bacterium Representing a Novel Class in the Phylum Fibrobacteres
- (2016) Dimitry Y. Sorokin et al. Frontiers in Microbiology
- The Gut Microbiota of Termites: Digesting the Diversity in the Light of Ecology and Evolution
- (2015) Andreas Brune et al. Annual Review of Microbiology
- Lignocellulose degradation mechanisms across the Tree of Life
- (2015) Simon M Cragg et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Dominant ectosymbiotic bacteria of cellulolytic protists in the termite gut also have the potential to digest lignocellulose
- (2015) Masahiro Yuki et al. ENVIRONMENTAL MICROBIOLOGY
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Phylogenetic diversity of Archaea in the intestinal tract of termites from different lineages
- (2015) Yu Shi et al. JOURNAL OF BASIC MICROBIOLOGY
- Termites amplify the effects of wood traits on decomposition rates among multiple bamboo and dicot woody species
- (2015) Guofang Liu et al. JOURNAL OF ECOLOGY
- Diet is the primary determinant of bacterial community structure in the guts of higher termites
- (2015) Aram Mikaelyan et al. MOLECULAR ECOLOGY
- Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology
- (2015) James I. Prosser NATURE REVIEWS MICROBIOLOGY
- Acetogenesis from H2plus CO2and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist
- (2015) Moriya Ohkuma et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Classifying the bacterial gut microbiota of termites and cockroaches: A curated phylogenetic reference database (DictDb)
- (2015) Aram Mikaelyan et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Compact graphical representation of phylogenetic data and metadata with GraPhlAn
- (2015) Francesco Asnicar et al. PeerJ
- Metagenomic analysis of the microbiota in the highly compartmented hindguts of six wood- or soil-feeding higher termites
- (2015) Karen Rossmassler et al. Microbiome
- A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes
- (2015) Nurdyana Abdul Rahman et al. Microbiome
- The Cockroach Origin of the Termite Gut Microbiota: Patterns in Bacterial Community Structure Reflect Major Evolutionary Events
- (2014) Carsten Dietrich et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Paludibacter jiangxiensis sp. nov., a strictly anaerobic, propionate-producing bacterium isolated from rice paddy field
- (2014) Yan-Ling Qiu et al. ARCHIVES OF MICROBIOLOGY
- Temperature impacts differentially on the methanogenic food web of cellulose-supplemented peatland soil
- (2014) Oliver Schmidt et al. ENVIRONMENTAL MICROBIOLOGY
- The fibre-associated cellulolytic bacterial community in the hindgut of wood-feeding higher termites (Nasutitermesspp.)
- (2014) Aram Mikaelyan et al. ENVIRONMENTAL MICROBIOLOGY
- Termite Nests as an Abundant Source of Cultivable Actinobacteria for Biotechnological Purposes
- (2014) Nikhom Sujada et al. MICROBES AND ENVIRONMENTS
- Symbiotic digestion of lignocellulose in termite guts
- (2014) Andreas Brune NATURE REVIEWS MICROBIOLOGY
- Metabolomic profiling of 13C-labelled cellulose digestion in a lower termite: insights into gut symbiont function
- (2014) G. Tokuda et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Termites promote soil carbon and nitrogen depletion: Results from an in situ macrofauna exclusion experiment, Peru
- (2014) Cecilia A.L. Dahlsjö et al. SOIL BIOLOGY & BIOCHEMISTRY
- Host-specific assemblages typify gut microbial communities of related insect species
- (2014) Zakee L Sabree et al. SpringerPlus
- The complete mitogenomes of six higher termite species reconstructed from metagenomic datasets (Cornitermes sp., Cubitermes ugandensis, Microcerotermes parvus, Nasutitermes corniger, Neocapritermes taracua, and Termes hospes)
- (2014) Carsten Dietrich et al. Mitochondrial DNA Part A
- Treatise on the Isoptera of the World
- (2013) Kumar Krishna et al. BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY
- Diversity and structure of bacterial communities associated withPhanerochaete chrysosporiumduring wood decay
- (2013) Vincent Hervé et al. ENVIRONMENTAL MICROBIOLOGY
- Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus
- (2013) Javier A Ceja-Navarro et al. ISME Journal
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
- (2013) Mads Albertsen et al. NATURE BIOTECHNOLOGY
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- IMG 4 version of the integrated microbial genomes comparative analysis system
- (2013) Victor M. Markowitz et al. NUCLEIC ACIDS RESEARCH
- Comparative Metagenomic and Metatranscriptomic Analysis of Hindgut Paunch Microbiota in Wood- and Dung-Feeding Higher Termites
- (2013) Shaomei He et al. PLoS One
- A phylogenomic and molecular signature based approach for characterization of the phylum Spirochaetes and its major clades: proposal for a taxonomic revision of the phylum
- (2013) Radhey S. Gupta et al. Frontiers in Microbiology
- High-Resolution Analysis of Gut Environment and Bacterial Microbiota Reveals Functional Compartmentation of the Gut in Wood-Feeding Higher Termites (Nasutitermes spp.)
- (2012) Tim Köhler et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
- (2012) Elmar Pruesse et al. BIOINFORMATICS
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Actinobacteria isolated from termite guts as a source of novel oxidative enzymes
- (2011) Marilize Le Roes-Hill et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Formyltetrahydrofolate Synthetase Gene Diversity in the Guts of Higher Termites with Different Diets and Lifestyles
- (2011) Elizabeth A. Ottesen et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Genomic and Physiological Characterization of the Verrucomicrobia Isolate Diplosphaera colitermitum gen. nov., sp. nov., Reveals Microaerophily and Nitrogen Fixation Genes
- (2011) John T. Wertz et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Characterization of Trapped Lignin-Degrading Microbes in Tropical Forest Soil
- (2011) Kristen M. DeAngelis et al. PLoS One
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- Genomic Analysis of "Elusimicrobium minutum," the First Cultivated Representative of the Phylum "Elusimicrobia" (Formerly Termite Group 1)
- (2009) D. P. R. Herlemann et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Novel lineages of Planctomycetes densely colonize the alkaline gut of soil-feeding termites (Cubitermes spp.)
- (2008) Tim Köhler et al. ENVIRONMENTAL MICROBIOLOGY
- Differences in cellulose digestive systems among castes in two termite lineages
- (2008) AI FUJITA et al. PHYSIOLOGICAL ENTOMOLOGY
- Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell
- (2008) Y. Hongoh et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome of an Endosymbiont Coupling N2 Fixation to Cellulolysis Within Protist Cells in Termite Gut
- (2008) Y. Hongoh et al. SCIENCE
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started