Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats

Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats

(2020) Yocelyn T Gutiérrez-Guerrero et al.   GigaScience

The Evolutionary History and Functional Divergence of Trehalase (treh) Genes in Insects

(2019) Andrea Nardelli et al.   Frontiers in Physiology

CD248: A therapeutic target in cancer and fibrotic diseases

(2019) Beverly A. Teicher   Oncotarget

Apolipoprotein A-IV: A Multifunctional Protein Involved in Protection against Atherosclerosis and Diabetes

(2019) Jie Qu et al.   Cells

Trehalase Gene as a Molecular Signature of Dietary Diversification in Mammals

(2019) Hengwu Jiao et al.   MOLECULAR BIOLOGY AND EVOLUTION

De Novo Transcriptome Assembly and Functional Annotation in Five Species of Bats

(2019) Diana D. Moreno-Santillán et al.   Scientific Reports

UniProt: the universal protein knowledgebase

(2018) The UniProt Consortium   NUCLEIC ACIDS RESEARCH

Single-molecule, full-length transcript sequencing provides insight into the extreme metabolism of the ruby-throated hummingbird Archilochus colubris

(2018) Rachael E Workman et al.   GigaScience

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat

(2018) M. Lisandra Zepeda Mendoza et al.   Nature Ecology & Evolution

Identifying drivers of parallel evolution: A regression model approach

(2018) Susan F Bailey et al.   Genome Biology and Evolution

Reef fish functional traits evolve fastest at trophic extremes

(2018) Samuel R. Borstein et al.   Nature Ecology & Evolution

Nutrient acquisition strategies of mammalian cells

(2017) Wilhelm Palm et al.   NATURE

Intense natural selection preceded the invasion of new adaptive zones during the radiation of New World leaf-nosed bats

(2017) Daniela M. Rossoni et al.   Scientific Reports

IPC – Isoelectric Point Calculator

(2016) Lukasz P. Kozlowski   Biology Direct

Exercise-stimulated glucose uptake — regulation and implications for glycaemic control

(2016) Lykke Sylow et al.   Nature Reviews Endocrinology

MeDuSa: a multi-draft based scaffolder

(2015) Emanuele Bosi et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Bayesian hierarchical models suggest oldest known plant-visiting bat was omnivorous

(2015) Laurel R. Yohe et al.   Biology Letters

AlignWise: a tool for identifying protein-coding sequence and correcting frame-shifts

(2015) Teri Evans et al.   BMC BIOINFORMATICS

Acetyl-CoA and the regulation of metabolism: mechanisms and consequences

(2015) Lei Shi et al.   CURRENT OPINION IN CELL BIOLOGY

Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection

(2015) Martin D. Smith et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Pla2g16 phospholipase mediates gain-of-function activities of mutant p53

(2014) S. Xiong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Vampire bats exhibit evolutionary reduction of bitter taste receptor genes common to other bats

(2014) W. Hong et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The human liver fatty acid binding protein (FABP1) gene is activated by FOXA1 and PPARα; and repressed by C/EBPα: Implications in FABP1 down-regulation in nonalcoholic fatty liver disease

(2013) Carla Guzmán et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Deletion of mouse Alkbh7 leads to obesity

(2013) A. Solberg et al.   Journal of Molecular Cell Biology

Morphological specialization influences nectar extraction efficiency of sympatric nectar-feeding bats

(2012) T. P. Gonzalez-Terrazas et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

AMP-activated protein kinase: an emerging drug target to regulate imbalances in lipid and carbohydrate metabolism to treat cardio-metabolic diseases

(2012) Rai Ajit K. Srivastava et al.   JOURNAL OF LIPID RESEARCH

MGAT2 deficiency ameliorates high-fat diet-induced obesity and insulin resistance by inhibiting intestinal fat absorption in mice

(2012) Takuma Tsuchida et al.   Lipids in Health and Disease

FastML: a web server for probabilistic reconstruction of ancestral sequences

(2012) H. Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Myosin Assembly, Maintenance and Degradation in Muscle: Role of the Chaperone UNC-45 in Myosin Thick Filament Dynamics

(2011) Torah Kachur et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

When did plants become important to leaf-nosed bats? Diversification of feeding habits in the family Phyllostomidae

(2011) DANNY ROJAS et al.   MOLECULAR ECOLOGY

Considering Transposable Element Diversification in De Novo Annotation Approaches

(2011) Timothée Flutre et al.   PLoS One

Follistatin-like 1 (Fstl1) is a bone morphogenetic protein (BMP) 4 signaling antagonist in controlling mouse lung development

(2011) Y. Geng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Role of Skeletal Muscle Glycogen Breakdown for Regulation of Insulin Sensitivity by Exercise

(2011) Jørgen Jensen et al.   Frontiers in Physiology

Ecological opportunity and the origin of adaptive radiations

(2010) J. B. YODER et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Evolution of the Sweet Taste Receptor Gene Tas1r2 in Bats

(2010) H. Zhao et al.   MOLECULAR BIOLOGY AND EVOLUTION

Intestinal alkaline phosphatase: multiple biological roles in maintenance of intestinal homeostasis and modulation by diet

(2010) Jean-Paul Lallès   NUTRITION REVIEWS

The evolution of bat pollination: a phylogenetic perspective

(2009) Theodore H. Fleming et al.   ANNALS OF BOTANY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Primitive Early Eocene bat from Wyoming and the evolution of flight and echolocation

(2008) Nancy B. Simmons et al.   NATURE