Phylum‐level diversity of the microbiome of the extremophilic basidiomycete fungus Pisolithus arhizus (Scop.) Rauschert: An island of biodiversity in a thermal soil desert

Soil bacterial community structure and extracellular enzyme activities under different land use types in a long-term reclaimed wetland

(2019) Lingling Huang et al.   JOURNAL OF SOILS AND SEDIMENTS

Bacterial community pattern along the sediment seafloor of the Arctic fjorden (Kongsfjorden, Svalbard)

(2019) Xiao-Mei Fang et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Database resources of the National Center for Biotechnology Information

(2019) Eric W Sayers et al.   NUCLEIC ACIDS RESEARCH

Archaea are prominent members of the prokaryotic communities colonizing common forest mushrooms

(2018) J.M. Rinta-Kanto et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Host genetic variation strongly influences the microbiome structure and function in fungal fruiting-bodies

(2018) Mari Pent et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial community structure along the subtidal sandy sediment belt of a high Arctic fjord (Kongsfjorden, Svalbard Islands)

(2018) Antonella Conte et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The genome and microbiome of a dikaryotic fungus (Inocybe terrigena , Inocybaceae) revealed by metagenomics

(2018) Mohammad Bahram et al.   Environmental Microbiology Reports

Two new species of Pisolithus (Sclerodermataceae) from Australasia, and an assessment of the confused nomenclature of P. tinctorius

(2018) TERESA LEBEL et al.   Phytotaxa

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

Morphological and cellular diversity of magnetotactic bacteria: A review

(2017) Tariqul Islam et al.   JOURNAL OF BASIC MICROBIOLOGY

Deciphering functional diversification within the lichen microbiota by meta-omics

(2017) Tomislav Cernava et al.   Microbiome

Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities

(2017) R. E. Danczak et al.   Microbiome

Retroelement-guided protein diversification abounds in vast lineages of Bacteria and Archaea

(2017) Blair G. Paul et al.   Nature Microbiology

Fungus-like mycelial fossils in 2.4-billion-year-old vesicular basalt

(2017) Stefan Bengtson et al.   Nature Ecology & Evolution

The Truffle Microbiome: Species and Geography Effects on Bacteria Associated with Fruiting Bodies of Hypogeous Pezizales

(2016) Gian Maria Niccolò Benucci et al.   MICROBIAL ECOLOGY

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

Metagenome sequence ofElaphomyces granulatusfrom sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and aProteobacteria-rich microbiome

(2015) C. Alisha Quandt et al.   ENVIRONMENTAL MICROBIOLOGY

Symbiosis with an endobacterium increases the fitness of a mycorrhizal fungus, raising its bioenergetic potential

(2015) Alessandra Salvioli et al.   ISME Journal

The Microbiome of Pinus muricata Ectomycorrhizae: Community Assemblages, Fungal Species Effects, and Burkholderia as Important Bacteria in Multipartnered Symbioses

(2015) Nhu H. Nguyen et al.   MICROBIAL ECOLOGY

Unusual biology across a group comprising more than 15% of domain Bacteria

(2015) Christopher T. Brown et al.   NATURE

Mosaic genome of endobacteria in arbuscular mycorrhizal fungi: Transkingdom gene transfer in an ancient mycoplasma-fungus association

(2015) Gloria Torres-Cortés et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Minimal genomes of mycoplasma-related endobacteria are plastic and contain host-derived genes for sustained life within Glomeromycota

(2015) Mizue Naito et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria

(2015) Brett J Baker et al.   Microbiome

In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3)

(2015) Noha H. Youssef et al.   PLoS One

Deep-biosphere consortium of fungi and prokaryotes in Eocene subseafloor basalts

(2014) S. Bengtson et al.   Geobiology

Community Analysis of Plant Biomass-Degrading Microorganisms from Obsidian Pool, Yellowstone National Park

(2014) Tatiana A. Vishnivetskaya et al.   MICROBIAL ECOLOGY

Photosynthesis in extreme environments: responses to different light regimes in the Antarctic algaKoliella antarctica

(2014) Nicoletta La Rocca et al.   PHYSIOLOGIA PLANTARUM

Bacterial complexes of the fruiting bodies and hyphosphere of certain basidiomycetes

(2013) Yu. A. Zagriadskaia et al.   BIOLOGY BULLETIN

Endophytic Burkholderia fungorum DBT1 can improve phytoremediation efficiency of polycyclic aromatic hydrocarbons

(2013) Marco Andreolli et al.   CHEMOSPHERE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

IMG/M 4 version of the integrated metagenome comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Origin of first cells at terrestrial, anoxic geothermal fields

(2012) A. Y. Mulkidjanian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Newly Isolated but Uncultivated Magnetotactic Bacterium of the Phylum Nitrospirae from Beijing, China

(2011) Wei Lin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DECIPHER, a Search-Based Approach to Chimera Identification for 16S rRNA Sequences

(2011) Erik S. Wright et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Evolution of an endofungal Lifestyle: Deductions from the Burkholderia rhizoxinica Genome

(2011) Gerald Lackner et al.   BMC GENOMICS

Biological nitrogen fixation in acidic high-temperature geothermal springs in Yellowstone National Park, Wyoming

(2011) Trinity L. Hamilton et al.   ENVIRONMENTAL MICROBIOLOGY

The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions

(2011) Stefano Ghignone et al.   ISME Journal

Common Features of Environmental and Potentially Beneficial Plant-Associated Burkholderia

(2011) Zulma Rocío Suárez-Moreno et al.   MICROBIAL ECOLOGY

Environmental and Gut Bacteroidetes: The Food Connection

(2011) François Thomas et al.   Frontiers in Microbiology

Culture-independent characterization of a novel, uncultivated magnetotactic member of the Nitrospirae phylum

(2010) Christopher T. Lefèvre et al.   ENVIRONMENTAL MICROBIOLOGY

New evidence for nitrogen fixation within the Italian white truffle Tuber magnatum

(2010) Elena Barbieri et al.   Fungal Biology

Lignin-modifying enzymes in filamentous basidiomycetes - ecological, functional and phylogenetic review

(2010) Taina K. Lundell et al.   JOURNAL OF BASIC MICROBIOLOGY

Dwarf mistletoe effects on soil basidiomycete community structure, soil fungal functional diversity, and soil enzyme function: Implications for climate change

(2010) Ken Cullings et al.   SOIL BIOLOGY & BIOCHEMISTRY

Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses

(2010) Pablo Yarza et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

The Ultramicrobacterium "Elusimicrobium minutum" gen. nov., sp. nov., the First Cultivated Representative of the Termite Group 1 Phylum

(2009) O. Geissinger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Burkholderiaspecies are ancient symbionts of legumes

(2009) CYRIL BONTEMPS et al.   MOLECULAR ECOLOGY

Responses of the Antarctic microalga Koliella antarctica (Trebouxiophyceae, Chlorophyta) to cadmium contamination

(2009) N. La Rocca et al.   PHOTOSYNTHETICA

Endofungal bacteria as producers of mycotoxins

(2009) Gerald Lackner et al.   TRENDS IN MICROBIOLOGY

Role of Porins for Uptake of Antibiotics by Mycobacterium smegmatis

(2008) O. Danilchanka et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Chemical Composition and Biological Properties of Portuguese Wild Mushrooms: A Comprehensive Study

(2008) Lillian Barros et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY