Deciphering functional diversification within the lichen microbiota by meta-omics

Differential sharing and distinct co-occurrence networks among spatially close bacterial microbiota of bark, mosses and lichens‬‬

(2017) Ines Aline Aschenbrenner et al.   MOLECULAR ECOLOGY

High Life Expectancy of Bacteria on Lichens

(2016) Tomislav Cernava et al.   MICROBIAL ECOLOGY

Basidiomycete yeasts in the cortex of ascomycete macrolichens

(2016) Toby Spribille et al.   SCIENCE

Better together: engineering and application of microbial symbioses

(2015) Stephanie G Hays et al.   CURRENT OPINION IN BIOTECHNOLOGY

Rhizobium–legume symbioses: the crucial role of plant immunity

(2015) Benjamin Gourion et al.   TRENDS IN PLANT SCIENCE

Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobaria pulmonaria L.

(2015) Armin Erlacher et al.   Frontiers in Microbiology

Microbial cargo: do bacteria on symbiotic propagules reinforce the microbiome of lichens?

(2014) Ines Aline Aschenbrenner et al.   ENVIRONMENTAL MICROBIOLOGY

Lichen-symbiotic cyanobacteria associated withPeltigerahave an alternative vanadium-dependent nitrogen fixation system

(2014) Brendan P. Hodkinson et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics

(2014) Martin Grube et al.   ISME Journal

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

New morphological aspects of cephalodium formation in the lichen Lobaria pulmonaria (Lecanorales, Ascomycota)

(2013) Carolina CORNEJO et al.   LICHENOLOGIST

A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies

(2013) Pratik Jagtap et al.   PROTEOMICS

Metagenomic De Novo Assembly of an Aquatic Representative of the Verrucomicrobial Class Spartobacteria

(2013) D. P. R. Herlemann et al.   mBio

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

The earliest records of internally stratified cyanobacterial and algal lichens from the Lower Devonian of the Welsh Borderland

(2012) Rosmarie Honegger et al.   NEW PHYTOLOGIST

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome

(2011) Brendan P. Hodkinson et al.   ENVIRONMENTAL MICROBIOLOGY

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Genome Sequence of Chthoniobacter flavus Ellin428, an Aerobic Heterotrophic Soil Bacterium

(2011) R. Kant et al.   JOURNAL OF BACTERIOLOGY

Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics

(2011) Thomas Schneider et al.   PROTEOMICS

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial Communities Associated with the Lichen Symbiosis

(2010) Scott T. Bates et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolism and function of phenazines in bacteria: impacts on the behavior of bacteria in the environment and biotechnological processes

(2010) Leland S. Pierson et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

(2010) Frank J Stewart et al.   ISME Journal

Microbial phylogeny and diversity: Small subunit ribosomal RNA sequence analysis and beyond

(2010) J. Rajendhran et al.   MICROBIOLOGICAL RESEARCH

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

A microbiotic survey of lichen-associated bacteria reveals a new lineage from the Rhizobiales

(2010) Brendan P. Hodkinson et al.   SYMBIOSIS

Development of a 16S rRNA-targeted probe set for Verrucomicrobia and its application for fluorescence in situ hybridization in a humic lake

(2010) Julia Arnds et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Diversity and Evolution of the Phenazine Biosynthesis Pathway

(2009) D. V. Mavrodi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Species-specific structural and functional diversity of bacterial communities in lichen symbioses

(2009) Martin Grube et al.   ISME Journal

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

In situ analysis of the bacterial community associated with the reindeer lichen Cladonia arbuscula reveals predominance of Alphaproteobacteria

(2008) Massimiliano Cardinale et al.   FEMS MICROBIOLOGY ECOLOGY