Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities
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Title
Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities
Authors
Keywords
Candidate phyla, Groundwater, Subsurface, Carbon, Nitrogen
Journal
Microbiome
Volume 5, Issue 1, Pages -
Publisher
Springer Nature
Online
2017-09-02
DOI
10.1186/s40168-017-0331-1
References
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- (2015) Birgit Luef et al. Nature Communications
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- (2015) William C. Nelson et al. Frontiers in Microbiology
- MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
- (2015) Dongwan D. Kang et al. PeerJ
- UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches
- (2014) B. E. Suzek et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer
- (2014) Kelly C Wrighton et al. ISME Journal
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- (2014) Pablo Yarza et al. NATURE REVIEWS MICROBIOLOGY
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- “Candidatus Sonnebornia yantaiensis”, a member of candidate division OD1, as intracellular bacteria of the ciliated protist Paramecium bursaria (Ciliophora, Oligohymenophorea)
- (2013) Jun Gong et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
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- (2013) R. S. Kantor et al. mBio
- Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2
- (2012) Martin Wu et al. BIOINFORMATICS
- SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
- (2012) Elmar Pruesse et al. BIOINFORMATICS
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
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- Anammox organism KSU-1 expresses a NirK-type copper-containing nitrite reductase instead of a NirS-type with cytochromecd1
- (2012) Daisuke Hira et al. FEBS LETTERS
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- dbCAN: a web resource for automated carbohydrate-active enzyme annotation
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- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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